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Hi John,

I think you can use `mris_calc` for this, e.g:

mris_calc -o ~/test-output $FREESURFER_HOME/subjects/bert/surf/lh.thickness lt $FREESURFER_HOME/subjects/bert/surf/lh.curv

Run `mris_calc -u` for more instructions.

-Paul

On Tue, Jun 29, 2021 at 1:04 PM Jacoby, John JJACOBY@mgh.harvard.edu wrote:

The "thresholding" options work well for thresholding a single overlay, but I would like to threshold one overlay using the values of a second overlay. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/16V7gsFjIl_SgUA3LD4MXuB76IZER0wQsNLM3aeC63FALvM... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/11QklgbQZ9j84JL-lPVOI1FKEffzNm2HDv0OiI4jCmLVAOJj... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.