Hi Chikku-- What is your discrete variable? does it have more than one level? is it entered in the fsgd file? It looks like your discrete variable(s) is not defined properly. It must have at least two levels (e.g. Male/Female, RightHanded/LeftHanded, etc.). Check your fsgd file to so it is properly constructed: check the following link for formatting a legal fsgd file. http://surfer.nmr.mgh.harvard.edu/fswiki/FsgdFormat
shantanu
On Thu, March 7, 2013 7:40 am, Varghese Chikku wrote:
shantanu, Many Thanks Still error loading data, this is what i am getting.
- freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/subjects MNI_DIR /Applications/freesurfer/mni chikkus-MacBook-Pro:~ chikkuvarghese$ cat /Users/chikkuvarghese/subject/qdec/anatomy.levels right hippocampus left hippocampuschikkus-MacBook-Pro:~ chikkuvarghese$ qdec
Reading /Applications/freesurfer/tktools/tkUtils.tcl
Using /Applications/freesurfer/lib/tcl/fsgdfPlot.tcl
Loading data table /Users/chikkuvarghese/subject/qdec/qdec.table.dat... Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 2 Reading discrete factor levels from config file /Users/chikkuvarghese/subject/qdec/age.levels age 70 71 done. Reading discrete factor levels from config file /Users/chikkuvarghese/subject/qdec/anatomy.levels right hippocampus done. ERROR: /Users/chikkuvarghese/subject/qdec/anatomy.levels is invalid. Must have at least two levels. Error loading the data table.
Kind Regards chikku
On 6 March 2013 18:19, Shantanu Ghosh shantanu@nmr.mgh.harvard.edu wrote:
ok try editing qdec.table.dat by just pressing <Enter> after the subject with the error and the last line hth. shantanu
On Wed, March 6, 2013 12:12 pm, Varghese Chikku wrote:
no luck Shantanu This comes up Loading data table
/Users/chikkuvarghese/subject/qdec/qdec.table.dat...
Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 1 ERROR: QdecDataTable::Load: problem parsing file /Users/chikkuvarghese/subject/qdec/qdec.table.dat This line did not appear to end with a newline: truetest2.long.ie 70 m
lefthippocampus
Error loading the data table.
this is what i did xedit qdec.table.dat/ and saved in to the qdec directory.After i saved it I noticed this,and extra file saying qdec.table.dat.textClipping Am I doing something terribly wrong, Sorry chikku
On 6 March 2013 17:34, Shantanu Ghosh shantanu@nmr.mgh.harvard.edu wrote:
Hi Chikku-- can you try with a /newline at the end of your .dat file? shantanu
On Wed, March 6, 2013 10:40 am, Varghese Chikku wrote:
All, Any idea how can I sort this error, Loading data table
/Users/chikkuvarghese/subject/qdec/qdec.table.dat...
Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 1 ERROR: QdecDataTable::Load: problem parsing file /Users/chikkuvarghese/subject/qdec/qdec.table.dat This line did not appear to end with a newline: truetest2.long.e Female 70 Righthippocampus 4006 Error loading the data table.
Many Thanks chikku _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging
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Shantanu Ghosh