Dear FreeSurfer group,
If I want to extract frontal WM volume, is it something doable in FreeSurfer?
Much obliged, Daniel
You can choose the areas that you want to define frontal from wmparc.mgz and add up the volumes. If you have another way to define frontal, then you'd have to tell us what that is.
doug
On 05/14/2014 05:37 PM, Yang, Daniel wrote:
Dear FreeSurfer group,
If I want to extract frontal WM volume, is it something doable in FreeSurfer?
Much obliged, Daniel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Doug,
Do you mean wmparc.stats? If yes, that is my understanding of the only way (so far) to estimate WM volume by FreeSurfer too, and you already told me (before) that it is only 5mm from white surface down into the brain center, correct??
I don't have a better way to do this so far.
If there is another way to get those WM volume by area other than wmparc.stats, can you let me know too?
Best, Daniel
On 5/14/14 5:58 PM, "Douglas N Greve" <greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu> wrote:
You can choose the areas that you want to define frontal from wmparc.mgz and add up the volumes. If you have another way to define frontal, then you'd have to tell us what that is.
doug
On 05/14/2014 05:37 PM, Yang, Daniel wrote: Dear FreeSurfer group,
If I want to extract frontal WM volume, is it something doable in FreeSurfer?
Much obliged, Daniel
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edumailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
On 05/14/2014 06:26 PM, Yang, Daniel wrote:
Hi Doug,
Do you mean wmparc.stats? If yes, that is my understanding of the only way (so far) to estimate WM volume by FreeSurfer too, and you already told me (before) that it is only 5mm from white surface down into the brain center, correct??
yes
I don't have a better way to do this so far.
If there is another way to get those WM volume by area other than wmparc.stats, can you let me know too?
This is the only way we have :-)
Best, Daniel
On 5/14/14 5:58 PM, "Douglas N Greve" <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
You can choose the areas that you want to define frontal from wmparc.mgz and add up the volumes. If you have another way to define frontal, then you'd have to tell us what that is. doug On 05/14/2014 05:37 PM, Yang, Daniel wrote: Dear FreeSurfer group, If I want to extract frontal WM volume, is it something doable in FreeSurfer? Much obliged, Daniel _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Yang, Daniel