Hi Doug,
Two questions: 1) In fsfast preprocessing is STC done first or MC? is there a way to control the order?
2) Also if STC is not mentioned in the analysis line and only done in the preprocessing would the analysis be run on the STC data automatically? or should I specify STC in the analysis for the selxavg3-sess to use the stc corrected data?
Thanks, M
On 01/31/2013 03:09 PM, Maryam Vaziri Pashkam wrote:
Hi Doug,
Two questions:
- In fsfast preprocessing is STC done first or MC? is there a way to
control the order?
MC is done first, then STC. There is not an easy way to control the order, though it may be possible.
- Also if STC is not mentioned in the analysis line and only done in
the preprocessing would the analysis be run on the STC data automatically? or should I specify STC in the analysis for the selxavg3-sess to use the stc corrected data?
Yes, you should specify all preproc options in the mkanalysis line doug
Thanks, M
freesurfer@nmr.mgh.harvard.edu