Thanks. I'm reading the surf2surf help but I do not understand the --trgsurfreg options. I'using mri_surf2surf --hemi rh --srcsubject fsaverage --srcsurfval thickness -- src_type curv --trgsubject Control21 --trgsurfval file?? Which is the file?
Thanks
Stefano
----Messaggio originale---- Da: Douglas N Greve greve@nmr.mgh.harvard.edu Data: 14-mag-2016 0.06 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mri_surf2vol
The overlay Control21/rest/fc.ramgseed.surf.rh/R_Amygdala/sig.nii.gz is in fsaverage space, so either change the subject to fsaverage, or use mri_surf2surf to map the overlay into Control21's space, then run mri_surf2vol
On 05/13/2016 06:03 PM, stdp82@virgilio.it wrote:
Hi list,
I'm using FS-FAST for seed based functional connectivity. For a subject, I would like to report the sig.nii.gz from the inflate to volume space.
I'm using
mri_surf2vol --surfval Control21/rest/fc.ramgseed.surf.rh/R_Amygdala/sig.nii.gz --hemi rh --fillribbon --subject Control21 --identity Control21 --template Control21/orig.mgz --o ramg2rh_sig_volspace.nii.gz
but this error reported below was obtained.
ERROR: dimension inconsistency in source data
Number of surface vertices = 123044 Number of value vertices = 163842Thanks
Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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by default it is sphere.reg. For this there is no reason to change it.
On 5/13/16 7:05 PM, stdp82@virgilio.it wrote:
Thanks. I'm reading the surf2surf help but I do not understand the --trgsurfreg options. I'using mri_surf2surf --hemi rh --srcsubject fsaverage --srcsurfval thickness -- src_type curv --trgsubject Control21 --trgsurfval file?? Which is the file?
Thanks
Stefano
----Messaggio originale---- Da: Douglas N Greve greve@nmr.mgh.harvard.edu Data: 14-mag-2016 0.06 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mri_surf2vol
The overlay Control21/rest/fc.ramgseed.surf.rh/R_Amygdala/sig.nii.gz is in fsaverage space, so either change the subject to fsaverage, or use mri_surf2surf to map the overlay into Control21's space, then run mri_surf2vol
On 05/13/2016 06:03 PM, stdp82@virgilio.it wrote:
Hi list,
I'm using FS-FAST for seed based functional connectivity. For a subject, I would like to report the sig.nii.gz from the inflate to volume space.
I'm using
mri_surf2vol --surfval Control21/rest/fc.ramgseed.surf.rh/R_Amygdala/sig.nii.gz --hemi rh --fillribbon --subject Control21 --identity Control21 --template Control21/orig.mgz --o ramg2rh_sig_volspace.nii.gz
but this error reported below was obtained.
ERROR: dimension inconsistency in source data
Number of surface vertices = 123044 Number of value vertices = 163842Thanks
Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine
at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Douglas Greve -
stdp82＠virgilio.it