Hi Catherine, fsaverage is part of the FS distribution. You can just: cd $SUBJECTS_DIR ln -s $FREESURFER_HOME/subjects/fsaverage . This will create a symbolic link to fsaverage in your $SUBJECTS_DIR doug

On 01/22/2013 09:17 AM, Catherine Bois wrote:

Hi,

I am considering using qdec, however due to our large dataset (and different individuals having been in charge at different times) I just realized that the folders fsaverage etc are "missing". As these are necessary for the qdec use, is there anything else I can do? Eg a command line to just generate the fsaverage for all my subjects?

Thank you for your help