Hi,
I was wondering if there is any way in FreeSurfer/FSL/MATLAB to determine whether the DTI data (in DICOM format) I have is multi-band sequence?
I used dicominfo in MATLAB but couldn't find any information related to multi-band in the dicom header.
Any help would be really appreciated.
I can't remember the tag numbers, but I believe the time of slice acquisition is in the dicom. You should be able to just pull that field on one volume and compare the field for all slices and see if any of them have the same time.
hth d
On Wed, Nov 30, 2016 at 12:10 PM, Martin Juneja mj70481@gmail.com wrote:
Hi,
I was wondering if there is any way in FreeSurfer/FSL/MATLAB to determine whether the DTI data (in DICOM format) I have is multi-band sequence?
I used dicominfo in MATLAB but couldn't find any information related to multi-band in the dicom header.
Any help would be really appreciated.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
That would be yet another way. For those that are curious, the field is “MosaicRefAcqTimes”.
cheers, -MH -- Michael Harms, Ph.D.
----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110Email: mharms@wustl.edu
On 11/30/16, 11:16 AM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of dgw" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of dgwakeman@gmail.com> wrote:
I can't remember the tag numbers, but I believe the time of slice acquisition is in the dicom. You should be able to just pull that field on one volume and compare the field for all slices and see if any of them have the same time.
hth d
On Wed, Nov 30, 2016 at 12:10 PM, Martin Juneja mj70481@gmail.com wrote:
Hi,
I was wondering if there is any way in FreeSurfer/FSL/MATLAB to determine whether the DTI data (in DICOM format) I have is multi-band sequence?
I used dicominfo in MATLAB but couldn't find any information related to multi-band in the dicom header.
Any help would be really appreciated.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Thanks a lot Dr. Harms and Dr. Wakeman for the help. This is really helpful.
On Wed, Nov 30, 2016 at 10:24 AM, Harms, Michael mharms@wustl.edu wrote:
That would be yet another way. For those that are curious, the field is “MosaicRefAcqTimes”.
cheers,
-MH
Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110Email: mharms@wustl.edu
On 11/30/16, 11:16 AM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of dgw" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of dgwakeman@gmail.com> wrote:
I can't remember the tag numbers, but I believe the time of slice acquisition is in the dicom. You should be able to just pull that field on one volume and compare the field for all slices and see if any of them have the same time.
hth d
On Wed, Nov 30, 2016 at 12:10 PM, Martin Juneja mj70481@gmail.com wrote:
Hi,
I was wondering if there is any way in FreeSurfer/FSL/MATLAB to determine whether the DTI data (in DICOM format) I have is multi-band sequence?
I used dicominfo in MATLAB but couldn't find any information related to multi-band in the dicom header.
Any help would be really appreciated.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you
in
error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Martin, I’ve addressed this in your query to the FSL list. Please see my response there.
-- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Martin Juneja <mj70481@gmail.commailto:mj70481@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Wednesday, November 30, 2016 at 11:10 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] DTI Multi band sequence?
Hi,
I was wondering if there is any way in FreeSurfer/FSL/MATLAB to determine whether the DTI data (in DICOM format) I have is multi-band sequence?
I used dicominfo in MATLAB but couldn't find any information related to multi-band in the dicom header.
Any help would be really appreciated.
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
freesurfer@nmr.mgh.harvard.edu
-
dgw -
Harms, Michael -
Martin Juneja