Hi Andrew, thanks for your reply. Yes, I am using bash and my operating system is Mac OS X 10.9.5. Could you direct me how to set a path correctly? I ran recon_all fine.
On Wed, Jan 24, 2018 at 1:14 PM, Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
Hi Hannah,
What kind of environment are you running this in? These errors make it seem like you do not have a PATH variable set at all. Are you using bash? and what operating system?
best
Andrew
On Jan 22, 2018, at 4:06 AM, Iglesias Gonzalez, Eugenio <
e.iglesias@ucl.ac.uk> wrote:
Hi Hannah,
This seems like a more general problem with your PATH, but I’m sure
Andrew (CCed) has a better idea of what might be going on.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
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On 20/01/2018, 00:23, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf
of Hannah's USC Email" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of shanluo@usc.edu> wrote:
Hi Freesurfer experts,
I tried to do hippocampus subfield analysis but failed. I got this
error message:
#@# Hippocampal Subfields processing (T1 only) left Fri Jan 19
15:27:36 PST 2018
dirname: Command not found.
pwd: Command not found.
pwd: Command not found.
/run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found.
#--------------------------------------------
#@# Hippocampal Subfields processing (T1 only) right Fri Jan 19
15:27:36 PST 2018
dirname: Command not found.
pwd: Command not found.
pwd: Command not found.
/run_segmentSubjectT1_autoEstimateAlveusML.sh: Command not found.
Your help would be greatly appreciated. Thanks!
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