It might be the data you are trying to load in. Does it happen with other subjects or volumes?

On 05/30/2014 12:17 PM, Cooke, Gillian wrote:

Thanks for the quick responses. I'm using version 10.7.5 - I purposely haven't updated this as we've been analysing a large set of intervention data. I'm also using freesurfer-Darwin-lion-stable-pub-v5.3.0 - again we've been consistent with this and have run everything in this version. I'm still using the same machine, I'm writing to a large server so there is plenty of space. The only updates I've installed since I last used Freesurfer successfully are safari and iTunes, and I was getting this error before that installation.

On May 30, 2014, at 11:04 AM, Bruce Fischl wrote:

...

Hi Gillian

what changed? Did you upgrade a video driver? Use a new machine? Update the operating system? Run out of disk space? Something is different....

Bruce On Fri, 30 May 2014, Cooke, Gillian wrote:

...

Hi, I've been working with Freesurfer for years and have suddenly been getting this fault: tkmedit started: Fri May 30 10:08:23 2014 /Applications/freesurfer/tktools/tkmedit.bin ACCE633_1 brainmask.mgz -aux T1.mgz -surfs $Id: tkmedit.c,v 1.343 2011/03/01 01:41:22 nicks Exp $ $Name: stable5 $ Set user home dir to /Users/gilliancooke Set subject home dir to /Volumes/HealthAging/ACCE/Freesurfer/ACCE633_1 Using interface file /Applications/freesurfer/tktools/tkmedit.tcl Segfault Setting global interpreter xDebug stack (length: 2) 01: main() 01: Setting global interpreter 00:Z K zkaufman@nmr.mgh.harvard.edu 00: Any suggestions? Many thanks, Gill _____________________ Gillian Cooke, Ph.D. Postdoctoral Research Associate Lifelong Brain & Cognition Lab Beckman Institute University of Illinois, Urbana

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Hi,

So I've now tried several subjects on my own computer and they all gave me this fault. I then tried several on another and it worked.

If I didn't update my OS version or my freesurfer version, is there another software update that could give me this fault?

Many thanks, Gill

On May 30, 2014, at 11:24 AM, Douglas N Greve wrote:

It might be the data you are trying to load in. Does it happen with other subjects or volumes?

On 05/30/2014 12:17 PM, Cooke, Gillian wrote:

...

Thanks for the quick responses. I'm using version 10.7.5 - I purposely haven't updated this as we've been analysing a large set of intervention data. I'm also using freesurfer-Darwin-lion-stable-pub-v5.3.0 - again we've been consistent with this and have run everything in this version. I'm still using the same machine, I'm writing to a large server so there is plenty of space. The only updates I've installed since I last used Freesurfer successfully are safari and iTunes, and I was getting this error before that installation.

On May 30, 2014, at 11:04 AM, Bruce Fischl wrote:

...

Hi Gillian

what changed? Did you upgrade a video driver? Use a new machine? Update the operating system? Run out of disk space? Something is different....

Bruce On Fri, 30 May 2014, Cooke, Gillian wrote:

...

Hi, I've been working with Freesurfer for years and have suddenly been getting this fault: tkmedit started: Fri May 30 10:08:23 2014 /Applications/freesurfer/tktools/tkmedit.bin ACCE633_1 brainmask.mgz -aux T1.mgz -surfs $Id: tkmedit.c,v 1.343 2011/03/01 01:41:22 nicks Exp $ $Name: stable5 $ Set user home dir to /Users/gilliancooke Set subject home dir to /Volumes/HealthAging/ACCE/Freesurfer/ACCE633_1 Using interface file /Applications/freesurfer/tktools/tkmedit.tcl Segfault Setting global interpreter xDebug stack (length: 2) 01: main() 01: Setting global interpreter 00:Z K zkaufman@nmr.mgh.harvard.edu 00: Any suggestions? Many thanks, Gill _____________________ Gillian Cooke, Ph.D. Postdoctoral Research Associate Lifelong Brain & Cognition Lab Beckman Institute University of Illinois, Urbana

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