If I want to install the new Freesurfer version but retain the older Freesurfer install as well, what issues might I face? Is it simply sourcing the usual setup scripts?
export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh
- Josh
Hi Josh, you can modify the SetUpFreeSurfer.sh to source the correct version. Hth, Shantanu
On Thu, February 21, 2013 12:55 pm, Joshua Lee wrote:
If I want to install the new Freesurfer version but retain the older Freesurfer install as well, what issues might I face? Is it simply sourcing the usual setup scripts?
export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh
Josh _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Or you may have multiple freesurfer versions within the freesurfer director, something like /freesurfer/5.0, /freesurfer/5.1, /freesurfer/5.2b, /freesurfer/5.2 etc. and then export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer/5.1 etc Hth, S.
On Thu, February 21, 2013 12:59 pm, Shantanu Ghosh wrote:
Hi Josh, you can modify the SetUpFreeSurfer.sh to source the correct version. Hth, Shantanu
On Thu, February 21, 2013 12:55 pm, Joshua Lee wrote:
If I want to install the new Freesurfer version but retain the older Freesurfer install as well, what issues might I face? Is it simply sourcing the usual setup scripts?
export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh
Josh _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks. Best, - Josh
On Thu, Feb 21, 2013 at 10:05 AM, Shantanu Ghosh < shantanu@nmr.mgh.harvard.edu> wrote:
Or you may have multiple freesurfer versions within the freesurfer director, something like /freesurfer/5.0, /freesurfer/5.1, /freesurfer/5.2b, /freesurfer/5.2 etc. and then export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer/5.1 etc Hth, S.
On Thu, February 21, 2013 12:59 pm, Shantanu Ghosh wrote:
Hi Josh, you can modify the SetUpFreeSurfer.sh to source the correct version. Hth, Shantanu
On Thu, February 21, 2013 12:55 pm, Joshua Lee wrote:
If I want to install the new Freesurfer version but retain the older Freesurfer install as well, what issues might I face? Is it simply sourcing the usual setup scripts?
export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.sh
Josh _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Usually what I do is create a sym link called "current" that I point to the newest version of Freesurfer. e.g. cd /usr/local/freesurfer ln -s $PWD/freesurfer-5.1.0 current
So then in my .bashrc file I set FREESURFER_HOME='/usr/local/freesurfer/current'
Obviously you can change this if you wanted to use an older version.
Chris
On 02/21/2013 08:43 PM, Joshua Lee wrote:
Thanks. Best,
Josh
On Thu, Feb 21, 2013 at 10:05 AM, Shantanu Ghosh <shantanu@nmr.mgh.harvard.edu mailto:shantanu@nmr.mgh.harvard.edu> wrote:
Or you may have multiple freesurfer versions within the freesurfer director, something like /freesurfer/5.0, /freesurfer/5.1, /freesurfer/5.2b, /freesurfer/5.2 etc. and then export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer/5.1 etc Hth, S. On Thu, February 21, 2013 12:59 pm, Shantanu Ghosh wrote: > Hi Josh, > you can modify the SetUpFreeSurfer.sh to source the correct version. > Hth, Shantanu > > On Thu, February 21, 2013 12:55 pm, Joshua Lee wrote: >> If I want to install the new Freesurfer version but retain the older >> Freesurfer install as well, what issues might I face? >> Is it simply sourcing the usual setup scripts? >> >> export FREESURFER_HOME=<freesurfer_installation_directory>/freesurfer >> source $FREESURFER_HOME/SetUpFreeSurfer.sh >> >> - >> Josh >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Shantanu Ghosh, Ph.D. > Harvard Medical School & Massachusetts General Hospital > Martinos Center for Biomedical Imaging > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Chris Watson -
Joshua Lee -
Shantanu Ghosh