Hi Mehul, that should work. Let us know if you have any problems. Kind regards, Juan Eugenio Iglesias

On Sat, 2013-03-16 at 14:29 -0700, Mehul Sampat wrote:

Hi Folks, I had a question about the hippocampus subfield segmentations as described here : http://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldSegmentation

I am planning to use this processing outline:

1. recon-all -s <subject> -autorecon1 -autorecon2
2. add control points
3. recon -all -s <subject> -autorecon2-cp
4. recon -all -s <subject> -autorecon3 -hippo-subfields

Is this permissible or do I need to need to introduce the -hippo-subfields flag earlier. Thanks Mehul _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer