I am having a problem using tkmedit and tksurfer with Freesurfer. Freeview is working. Below is the tkmedit error and relevant specs. Any suggestions are welcome.
General Specs Apple OS 10.6.8 Processor: 2x 2.26 Ghz Quad-core Intel Xeon 16 GB DDR3 Freesurfer Ver 5.3.0 Chipset Model: NVIDIA GeForce GT 120
Graphic card Specs Chipset Model: NVIDIA GeForce GT 120 Type: GPU Bus: PCIe Slot: Slot-1 PCIe Lane Width: x16 VRAM (Total): 512 MB Vendor: NVIDIA (0x10de) Device ID: 0x0640 Revision ID: 0x00a1 ROM Revision: 3386 Displays: VG930m-3: Resolution: 1280 x 1024 @ 60 Hz Pixel Depth: 32-Bit Color (ARGB8888) Display Serial Number: QC2094821097 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Display Connector: Status: No Display Connected
Code [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% tkmedit bert/ brainmask.mgz -aux T1.mgz -surfs -aseg Couldn't create output file .xdebug_tkmedit^CKilled [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% cd .. [Victor-Marks-Mac-Pro:freesurfer/subjects/bert] victormark% cd .. [Victor-Marks-Mac-Pro:/Applications/freesurfer/subjects] victormark% tkmedit bert/ brainmask.mgz -aux T1.mgz -surfs -aseg Converting main surface: 100% done. Converting main surface: 100% done. Converting pial surface: 100% done. Converting main surface: 100% done. Converting main surface: 100% done. Converting pial surface: 100% done. LoadSegmentationVolume main aseg.mgz /Applications/freesurfer//FreeSurferColorLUT.txt Bus error
Hi Amber,
See the following wikipage which I created to troubleshoot various GUI issues. Specifically the second issue down which addresses the "Bus Error".
https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_GUIs_troubleshooting
-Zeke
On 05/24/2013 03:26 PM, Amber M Gregory wrote:
I am having a problem using tkmedit and tksurfer with Freesurfer. Freeview is working. Below is the tkmedit error and relevant specs. Any suggestions are welcome.
General Specs* Apple OS 10.6.8 Processor: 2x 2.26 Ghz Quad-core Intel Xeon 16 GB DDR3 Freesurfer Ver 5.3.0 Chipset Model: NVIDIA GeForce GT 120
*Graphic card Specs* Chipset Model: NVIDIA GeForce GT 120 Type: GPU Bus: PCIe Slot: Slot-1 PCIe Lane Width: x16 VRAM (Total): 512 MB Vendor: NVIDIA (0x10de) Device ID: 0x0640 Revision ID: 0x00a1 ROM Revision: 3386 Displays: VG930m-3: Resolution: 1280 x 1024 @ 60 Hz Pixel Depth: 32-Bit Color (ARGB8888) Display Serial Number: QC2094821097 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Display Connector: Status: No Display Connected
Code* [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% tkmedit bert/ brainmask.mgz -aux T1.mgz -surfs -aseg Couldn't create output file .xdebug_tkmedit^CKilled [Victor-Marks-Mac-Pro:subjects/bert/mri] victormark% cd .. [Victor-Marks-Mac-Pro:freesurfer/subjects/bert] victormark% cd .. [Victor-Marks-Mac-Pro:/Applications/freesurfer/subjects] victormark% tkmedit bert/ brainmask.mgz -aux T1.mgz -surfs -aseg Converting main surface: 100% done. Converting main surface: 100% done. Converting pial surface: 100% done. Converting main surface: 100% done. Converting main surface: 100% done. Converting pial surface: 100% done. LoadSegmentationVolume main aseg.mgz /Applications/freesurfer//FreeSurferColorLUT.txt Bus error
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Amber M Gregory -
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