External Email - Use Caution

​Hello Christian, When a test fails, it should leave behind a log in the subdir for the command, e.g., if the test for ./mri_aparc2aseg fails, then there should be a /mri_aparc2aseg fails,/test_mri_aparc2aseg.log to look at.  But you will need a python3 with the modules from the scientific stack (scipy, numpy, etc.) installed for some tests to run.  You can use python3 from the anaconda distribution, so you would end up with <base path>/anaconda3/bin in the head of your PATH, and you would also need to add at least <base path>/anaconda3/lib/python3.6/site-packages to PYTHONPATH Please keep in mind that if you are building the latest freesurfer from the git dev branch, then it is not a release and has not been tested like a release.  A more comprehensive test than "make test" is to run a recon-all command on the subject "bert" data.  Please see Example 2 under the section "Testing your Freesurfer Installation" from the web page, https://surfer.nmr..mgh.harvard.edu/fswiki/DownloadAndInstall%C2%A0; (Setup your environment with the shell init files before running recon-all - see the section on the same page for "Setup & Configuration" using wherever you installed Freesurfer from your build).

On Nov 2, 2018, at 23:08, Christian Lee Mcdaniel <clm121@uga.edu> wrote:        External Email - Use Caution        Thank you to all who are providing input for these issues. After ensuring the correct versions of gcc, g++, and gfortran were installed and being used, I am able to complete the `make` command. However, when I conduct `make test`, I receive the following output: ... output with errors not shown ....