Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki tutorial. Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a sphere on the display.But I'm not able to map it and provide the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph" gives me the error "Flag unrecognized"..
THanks in advance.
Chacko.
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Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load curvature->rh.curv (or rh.sulc)
cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki tutorial. Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a sphere on the display.But I'm not able to map it and provide the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph" gives me the error "Flag unrecognized"..
THanks in advance.
Chacko.
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
THanks Bruce. I ve been having some problems with display..in the sense that when I minimize the diplay window and open it back there's nothing in it.Just wnated to confirm whether this is any sort of graphics driver problem.
THanx
Chacko.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load curvature->rh.curv (or rh.sulc)
cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki
tutorial.
Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a
sphere
on the display.But I'm not able to map it and
provide
the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph"
gives me
the error "Flag unrecognized"..
THanks in advance.
Chacko.
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protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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that's normal. You need to click the redraw button (or alt-r) On Thu, 29 Jun 2006, Chacko Cherian wrote:
THanks Bruce. I ve been having some problems with display..in the sense that when I minimize the diplay window and open it back there's nothing in it.Just wnated to confirm whether this is any sort of graphics driver problem.
THanx
Chacko.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load curvature->rh.curv (or rh.sulc)
cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki
tutorial.
Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a
sphere
on the display.But I'm not able to map it and
provide
the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph"
gives me
the error "Flag unrecognized"..
THanks in advance.
Chacko.
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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The other question that I have is about templates.I suppose Freesurfer uses MNI templates.How do I add my templates on to Freesurfer if I want to use say monkey or mice data?
THAnks Chacko.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load curvature->rh.curv (or rh.sulc)
cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki
tutorial.
Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a
sphere
on the display.But I'm not able to map it and
provide
the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph"
gives me
the error "Flag unrecognized"..
THanks in advance.
Chacko.
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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there are some people using it for monkey data, not sure about mice. I don't have much experience with the monkey stuff, so you'll need to get that from someone else on the list (hopefully)
Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
The other question that I have is about templates.I suppose Freesurfer uses MNI templates.How do I add my templates on to Freesurfer if I want to use say monkey or mice data?
THAnks Chacko.
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Chacko,
after tksurfer is loaded, from the gui do file->curvature->load curvature->rh.curv (or rh.sulc)
cheers, Bruce On Thu, 29 Jun 2006, Chacko Cherian wrote:
Hello everyone,
In spherical morphometry,to create the spherical surfaces,Im using the step 8.1 in the Wiki
tutorial.
Could someone please explain what the colors stand for? DOING "tksurfer subj001 rh sphere" gives me a
sphere
on the display.But I'm not able to map it and
provide
the overlay info rh.curv. the command "tksurfer -subjid subj001 -morph"
gives me
the error "Flag unrecognized"..
THanks in advance.
Chacko.
Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam
protection around
http://mail.yahoo.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hello everyone,
How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff and then printing them.IS there any way to print them directly?
THAnx
Chacko.
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How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff and then printing them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that tkmedit and tksurfer do of that kind.
but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff and then printing them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that tkmedit and tksurfer do of that kind.
If there is interest, I could post my shell script for generating a tcl script and running tksurfer (with an option to write to rgb). I have another one that will render all w files in a particular directory (as rgb's) and another that will render all frames from an mgh (painted surface) file (as tif's).
With the older version of tksurfer, you can render offscreen, which is convenient for batches of files (because otherwise your monitor is unusable for a long time).
From: Bruce Fischl fischl@nmr.mgh.harvard.edu To: Kevin Teich kteich@nmr.mgh.harvard.edu CC: Chacko Cherian chacko_cherian@yahoo.com, freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] printing out from tksurfer and tkmedit Date: Fri, 30 Jun 2006 11:39:03 -0400 (EDT)
but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from tksurfer and tkmedit other than manually saving them into tiff and then printing them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that tkmedit and tksurfer do of that kind.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thanks Don.That would be really useful.
Chacko.
--- Don Hagler dhaglerjr@hotmail.com wrote:
If there is interest, I could post my shell script for generating a tcl script and running tksurfer (with an option to write to rgb). I have another one that will render all w files in a particular directory (as rgb's) and another that will render all frames from an mgh (painted surface) file (as tif's).
With the older version of tksurfer, you can render offscreen, which is convenient for batches of files (because otherwise your monitor is unusable for a long time).
From: Bruce Fischl fischl@nmr.mgh.harvard.edu To: Kevin Teich kteich@nmr.mgh.harvard.edu CC: Chacko Cherian chacko_cherian@yahoo.com, freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] printing out from
tksurfer and tkmedit
Date: Fri, 30 Jun 2006 11:39:03 -0400 (EDT)
but you could write a tcl script to do it
automatically
On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from
tksurfer and
tkmedit other than manually saving them into tiff
and then printing
them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that
tkmedit and tksurfer
do of that kind.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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when i want to print-out the outputs using "Save TIFF as" it isn't giving me any results.Is there something else that I need to do to save the outputs as TIFF files??
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from
tksurfer and
tkmedit other than manually saving them into tiff
and then printing
them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that
tkmedit and tksurfer
do of that kind.
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just make sure that the window shows as you want it (you may need to redraw it before hitting save).
On Wed, 12 Jul 2006, Chacko Cherian wrote:
when i want to print-out the outputs using "Save TIFF as" it isn't giving me any results.Is there something else that I need to do to save the outputs as TIFF files??
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from
tksurfer and
tkmedit other than manually saving them into tiff
and then printing
them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that
tkmedit and tksurfer
do of that kind.
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Can you say exactly what you're doing so we can try to reproduce it?
On Wed, Jul 12, 2006 at 10:46:34PM -0700, Chacko Cherian wrote:
when i want to print-out the outputs using "Save TIFF as" it isn't giving me any results.Is there something else that I need to do to save the outputs as TIFF files??
--- Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
but you could write a tcl script to do it automatically On Fri, 30 Jun 2006, Kevin Teich wrote:
How can I can I print out the display images from
tksurfer and
tkmedit other than manually saving them into tiff
and then printing
them.IS there any way to print them directly?
No, sorry, saving TIFFs is the only output that
tkmedit and tksurfer
do of that kind.
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Chacko Cherian -
Don Hagler -
Kevin Teich