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Hello James, In this thread from January 2021, https://secure-web.cisco.com/1_ezGYyWFKiVAojF3gcdp8pGH5ZDmCAz1KucNZh4oW5ZYOS..., someone who got the same deployrc error was advised to try the following:Can you please remove the MCR directory and install it using the instructions found at https://secure-web.cisco.com/1euGMRsVtt4HFP_v7Lx9opw-gd8TRT1kiHLB6hHaSoy0XGz... I think this will fix the issue.So I would take a look at that thread, and maybe give that a try if you have not already done the matlab runtime installation that way. - R. On Aug 16, 2021, at 21:57, James Allebone <james.allebone@gmail.com> wrote: External Email - Use Caution Hello,I am trying to run the new hippocampal module. I successfully complete recon-all, but the receive the following error message when attempting to run the hippocampal module - any help would be greatly appreciated:USER developerHOST developer-VirtualBoxPROCESSID 14407 PROCESSOR x86_64OS LinuxITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 1 Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux------------------------------ freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b setenv SUBJECTS_DIR /usr/local/freesurfer/7.1.0-1/subjectscd /usr/local/freesurfer/7.1.0-1/subjects/usr/local/freesurfer/7.1.0-1/bin/segmentHA_T1.sh sub1#--------------------------------------------#@# Hippocampal Subfields processing (T1) left Mon Aug 16 21:52:59 EDT 2021------------------------------------------Setting up environment variables---LD_LIBRARY_PATH is .:/usr/lib/x86_64-linux-gnu:/usr/local/freesurfer/7.1.0-1/MCRv84//runtime/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//bin/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/os/glnxa64:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/7.1.0-1/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64::/usr/lib/libreoffice/programError using checkRequiredMCRProducts (line 25)Java exception occurred: java.lang.NullPointerExceptionat com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:56)at com.mathworks.install.InstalledProductFactory$1.execute(InstalledProductFactory.java:49)at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.executeTask(InstalledProductFactory.java:193)at com.mathworks.install.InstalledProductFactory$InstallerWorkSpace.access$200(InstalledProductFactory.java:108)at com.mathworks.install.InstalledProductFactory.getInstalledProducts(InstalledProductFactory.java:67)Error in deployrc (line 9)Error in matlabrc (line 238)Command exited with non-zero status 255@#@FSTIME 2021:08:16:21:52:59 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 e 27.66 S 0.35 U 4.99 P 19% M 230080 F 1257 R 31454 W 0 c 1432 w 5142 I 386408 O 84096 L 1.33 1.10 0.95@#@FSLOADPOST 2021:08:16:21:53:27 run_segmentSubjectT1_autoEstimateAlveusML.sh N 13 1.47 1.17 0.98Linux developer-VirtualBox 5.3.0-53-generic #47~18.04.1-Ubuntu SMP Thu May 7 13:10:50 UTC 2020 x86_64 x86_64 x86_64 GNU/LinuxT1 hippocampal subfields exited with ERRORS at Mon Aug 16 21:53:27 EDT 2021-- James Allebone | MPsych, Ph.D. (Clinical Neuropsychology)Melbourne School of Psychological SciencesThe University of MelbourneFlorey Institute of Neuroscience and Mental HealthMelbourne Brain Centre, Austin Campus245 Burgundy Street, Heidelberg VIC 3084 MailScanner has detected a possible fraud attempt from "secure-web..cisco.com" claiming to be http://secure-web.cisco.com/1AQK4e4G_gYVm-sqzpIO3xlVCN5-yUUR9qW0Eg_6Rc43L0Fe... mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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