Hi Shannon,

I have no idea why it would run and then when re-running it fails. Are you calling it exactly the same way? Do you have write permissions in those directories. If it prints the command (mris_label_calc) that it is trying to run, can you try to run only that command?

Also you can try the new version from here: http://martinos.org/~mreuter/long (parameters are a little different, e.g. you need to specify the subjects dir with --sd I think and some other flags have changed from out_??? to name_???, as they can also be inputs )

Best, Martin

On Fri, 2012-08-31 at 09:54 -1000, Shannon Kogachi wrote:

Hi Freesurfers, I've just tried to use the long_mris_slopes command on some longitudinal data. I've created my long.qdec.table.dat file. I've run this command before without any problems but I need to re-run it again. This time when I try to re-run it this error pops up:

ERROR 1 : mris_label_calc intersect did not work?

Is there any way to fix this? it also tells me the following:

cp: target 'path/subjectID/lh.long.cortex.label' is not a directory

Please let me know if there is any way to fix this. thank you!!

-Shannon K. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer