Hi, I have some confusion. When I completely run the command, recon-all –s x249 –autorecon1, and I should stop to check for problems with intensity normalization, talairach transformation and skull stripping. How can I do to check these problems? And, which is I must do first?
Thanks.
Hi,
we don't usually stop and check anymore as things fail pretty rarely. You can look at the tutorial on the wiki for examples of the types of failures and how to fix them.
cheers, Bruce
On Wed, 2 Jan 2008, Feng-Xian Yan wrote:
Hi, I have some confusion. When I completely run the command, recon-all –s x249 –autorecon1, and I should stop to check for problems with intensity normalization, talairach transformation and skull stripping. How can I do to check these problems? And, which is I must do first?
Thanks.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The tutorial is here (it's 2 pages, be sure to click 'next'): https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData Allison
On Wed, 2 Jan 2008, Bruce Fischl wrote:
Hi,
we don't usually stop and check anymore as things fail pretty rarely. You can look at the tutorial on the wiki for examples of the types of failures and how to fix them.
cheers, Bruce
On Wed, 2 Jan 2008, Feng-Xian Yan wrote:
Hi, I have some confusion. When I completely run the command, recon-all ¡Vs x249 ¡Vautorecon1, and I should stop to check for problems with intensity normalization, talairach transformation and skull stripping. How can I do to check these problems? And, which is I must do first?
Thanks.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Allison Stevens -
Bruce Fischl -
Feng-Xian Yan