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Hello Sabrena, We have some notes posted about setting up WSL on the wiki page under, https://secure-web.cisco.com/1c9KrekHizcdGhd-EUpY8z6zQtrZ7Hnb3DsudqV1c_pPEjJ... You are probably running some version of WSL version 2 (WSL2), but since WSL can change w/o notice, we can’t guarantee our notes work for every Windows 11 (or Windows 10) setup. See the section there "Setup and Install WSL version 2” including the link to the MS documentation. If you can get WSL working and login to its Ubuntu Linux terminal window, then we can direct you how to install the freesurfer 7.4.1 release. If you want to run freeview to view brain images with WSL, you will also need to install a 3rd party X-server like XMing to MobaXterm as well on your Windows system. Some users have not been able to get freeview to work on their system after consulting our wiki page notes. An alternative to using WSL is to use a different virtualization application like VirtualBox. Some users find VirtualBox easier to setup and manage especially compared to getting WSL to work with freeview and viewing images. You would download and install the VirtualBox application on your Windows machine, and then download and install our Ubuntu 18 Linux OS image with Freesurfer pre-installed. The notes for that are under,https://secure-web.cisco.com/1P4pBW1lhSQIuXvY6PhRq81dp468Q3FTax8bdRBv1NVIxsc... can send you the codes to unlock the VirtualBox image and login. With the VirtualBox setup, there is no additional 3rd party X-server setup needed in order to view images with freeview. - R. Begin forwarded message:From: Sabrena Tuy <stuy2746@sdsu.edu> Subject: [Freesurfer] Installation Support for Windows (WSL Linux) Date: September 2, 2023 at 20:18:48 EDT To: freesurfer@nmr.mgh.harvard.edu Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
External Email - Use Caution Hello,I am a student in an MRI lab at SDSU that uses Freesurfer religiously, and unfortunately, I am a Windows (11) user. I have scrolled mindlessly and have made some progress on beginning the installation for Freesurfer, but I have come to a complete standstill.. Is there any way you can help me install the program onto my PC since I will need to use it for my lab work?Sincerely,Sabrena TuySincerely,Sabrena Tuy_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Sabrena,
Once you get it working the WSL option works flawlessly but it can be tricky to get over the first hurdle. The help instructions are written assuming that you are fluent in Linux.
Check which version of Ubuntu you have. When you start WSL it will give you a message like:
Welcome to Ubuntu 22.04.2
and download the corresponding release of Freesurfer 7.4.1 The help doesn't tell you how to download or install the package and I'm afraid I have forgotten the commands.
Maybe someone else can chime in here?
I use VcXsrv for my X-server graphics interface.
Michael
On Sun, Sep 3, 2023 at 7:23 AM fsbuild fsbuild@contbay.com wrote:
External Email - Use CautionHello Sabrena,
We have some notes posted about setting up WSL on the wiki page under,
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/16p5G_nVUuLoPm9ZCAxyWRKYSEqQ_Cf0buFZDYT42KWZa_g... https://secure-web.cisco.com/1c9KrekHizcdGhd-EUpY8z6zQtrZ7Hnb3DsudqV1c_pPEjJ1H75BRvca6NRs_TRT6TsXulVKkhed9uxHkgEBBOLR3pJ1QadfUPK9NxzguGJR-9ZEdXbrbGgTiLMC3In-V_1eOTIHf0B8pxWbJcjhkapSbXWjqaraZgKCwigULr2pOXXSZBffwbUX8kMFxbI7lqhsp09hkOwjZUWEqA-D_kikevtPV4pp-1tyt230wlx3hRfEFEslJpansh_4yBibdUHv9pMqyR_dNZwNRQpWAWtaSfk1ChYf1ej-pW-xOjqtkmBb1HCTHC9QEg2eD1QI2kiko5M4aVy3zO_PYwX3pVg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2F%2FFS7_wsl
You are probably running some version of WSL version 2 (WSL2), but since WSL can change w/o notice, we can’t guarantee our notes work for every Windows 11 (or Windows 10) setup. See the section there "Setup and Install WSL version 2” including the link to the MS documentation. If you can get WSL working and login to its Ubuntu Linux terminal window, then we can direct you how to install the freesurfer 7.4.1 release.
If you want to run freeview to view brain images with WSL, you will also need to install a 3rd party X-server like XMing to MobaXterm as well on your Windows system. Some users have not been able to get freeview to work on their system after consulting our wiki page notes.
An alternative to using WSL is to use a different virtualization application like VirtualBox. Some users find VirtualBox easier to setup and manage especially compared to getting WSL to work with freeview and viewing images. You would download and install the VirtualBox application on your Windows machine, and then download and install our Ubuntu 18 Linux OS image with Freesurfer pre-installed. The notes for that are under,
https://secure-web.cisco.com/1-I2psRogFqSwwE6-f-iIWbrFHAKZ6YeLhuBhQb8YRZSAHz...
We can send you the codes to unlock the VirtualBox image and login. With the VirtualBox setup, there is no additional 3rd party X-server setup needed in order to view images with freeview.
- R.
Begin forwarded message:
*From: *Sabrena Tuy stuy2746@sdsu.edu *Subject: **[Freesurfer] Installation Support for Windows (WSL Linux)* *Date: *September 2, 2023 at 20:18:48 EDT *To: *freesurfer@nmr.mgh.harvard.edu *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu
External Email - Use CautionHello,
I am a student in an MRI lab at SDSU that uses Freesurfer religiously, and unfortunately, I am a Windows (11) user. I have scrolled mindlessly and have made some progress on beginning the installation for Freesurfer, but I have come to a complete standstill.. Is there any way you can help me install the program onto my PC since I will need to use it for my lab work?
Sincerely, Sabrena Tuy
Sincerely, Sabrena Tuy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18cKFs_Dmd1ccdiqVSoRmoF17i7EnVpCkA_iSBu-E83f0bu...
-- This is a copy of a message which has been originally sent to: "To" field: freesurfer@nmr..mgh.harvard.edu "Copy" field: stuy2746@sdsu.edu The message has been sent by https://secure-web.cisco.com/1E9m6jTaBUDrI903cwsu0LsH30JmOgd9eCUj_D8GacU6yzi... and the used account name was: SSL _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18cKFs_Dmd1ccdiqVSoRmoF17i7EnVpCkA_iSBu-E83f0bu... Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
External Email - Use Caution
Hello!
After wiping out WSL and Ubuntu, I restarted the process with some different instructions guides by an outdated page from the website and I believe someone linked it in a response of supporting me as well. Fortunately, I was able to figure it out!! Thanks for all of your help!
Sincerely, Sabrena Tuy
On Mon, Sep 4, 2023 at 1:22 AM Michael Mc Laughlin michael@thecurate.com wrote:
Hi Sabrena,
Once you get it working the WSL option works flawlessly but it can be tricky to get over the first hurdle. The help instructions are written assuming that you are fluent in Linux.
Check which version of Ubuntu you have. When you start WSL it will give you a message like:
Welcome to Ubuntu 22.04.2
and download the corresponding release of Freesurfer 7.4.1 The help doesn't tell you how to download or install the package and I'm afraid I have forgotten the commands.
Maybe someone else can chime in here?
I use VcXsrv for my X-server graphics interface.
Michael
On Sun, Sep 3, 2023 at 7:23 AM fsbuild fsbuild@contbay.com wrote:
External Email - Use CautionHello Sabrena,
We have some notes posted about setting up WSL on the wiki page under,
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1KuZRpV71cm1droCXONh1HILt4m55vVI_fX0-1RnQnpxLgD... https://secure-web.cisco.com/1c9KrekHizcdGhd-EUpY8z6zQtrZ7Hnb3DsudqV1c_pPEjJ1H75BRvca6NRs_TRT6TsXulVKkhed9uxHkgEBBOLR3pJ1QadfUPK9NxzguGJR-9ZEdXbrbGgTiLMC3In-V_1eOTIHf0B8pxWbJcjhkapSbXWjqaraZgKCwigULr2pOXXSZBffwbUX8kMFxbI7lqhsp09hkOwjZUWEqA-D_kikevtPV4pp-1tyt230wlx3hRfEFEslJpansh_4yBibdUHv9pMqyR_dNZwNRQpWAWtaSfk1ChYf1ej-pW-xOjqtkmBb1HCTHC9QEg2eD1QI2kiko5M4aVy3zO_PYwX3pVg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2F%2FFS7_wsl
You are probably running some version of WSL version 2 (WSL2), but since WSL can change w/o notice, we can’t guarantee our notes work for every Windows 11 (or Windows 10) setup. See the section there "Setup and Install WSL version 2” including the link to the MS documentation. If you can get WSL working and login to its Ubuntu Linux terminal window, then we can direct you how to install the freesurfer 7.4.1 release.
If you want to run freeview to view brain images with WSL, you will also need to install a 3rd party X-server like XMing to MobaXterm as well on your Windows system. Some users have not been able to get freeview to work on their system after consulting our wiki page notes.
An alternative to using WSL is to use a different virtualization application like VirtualBox. Some users find VirtualBox easier to setup and manage especially compared to getting WSL to work with freeview and viewing images. You would download and install the VirtualBox application on your Windows machine, and then download and install our Ubuntu 18 Linux OS image with Freesurfer pre-installed. The notes for that are under,
https://secure-web.cisco.com/1t90Xwaw3qSqISDfUTeLquzqg1Q_UfP-AQfSXyNoOCw6QTP...
We can send you the codes to unlock the VirtualBox image and login. With the VirtualBox setup, there is no additional 3rd party X-server setup needed in order to view images with freeview.
- R.
Begin forwarded message:
*From: *Sabrena Tuy stuy2746@sdsu.edu *Subject: **[Freesurfer] Installation Support for Windows (WSL Linux)* *Date: *September 2, 2023 at 20:18:48 EDT *To: *freesurfer@nmr.mgh.harvard.edu *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu
External Email - Use CautionHello,
I am a student in an MRI lab at SDSU that uses Freesurfer religiously, and unfortunately, I am a Windows (11) user. I have scrolled mindlessly and have made some progress on beginning the installation for Freesurfer, but I have come to a complete standstill.. Is there any way you can help me install the program onto my PC since I will need to use it for my lab work?
Sincerely, Sabrena Tuy
Sincerely, Sabrena Tuy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1iFEHblRKSo0DDvARADFC4bHCoAU9TucAc_MsG8D7nJwFq_...
-- This is a copy of a message which has been originally sent to: "To" field: freesurfer@nmr..mgh.harvard.edu "Copy" field: stuy2746@sdsu.edu The message has been sent by https://secure-web.cisco.com/12t-bTi3CpJ47Gtdzue3VSh6RXfXlIY9SRIjKcCW294uGfg... and the used account name was: SSL
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1iFEHblRKSo0DDvARADFC4bHCoAU9TucAc_MsG8D7nJwFq_...
Please note that this e-mail is not secure (encrypted). If you do not
wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
External Email - Use Caution
Cool! Thanks for the update!
On Mon, Sep 4, 2023 at 6:17 PM Sabrena Tuy stuy2746@sdsu.edu wrote:
Hello!
After wiping out WSL and Ubuntu, I restarted the process with some different instructions guides by an outdated page from the website and I believe someone linked it in a response of supporting me as well. Fortunately, I was able to figure it out!! Thanks for all of your help!
Sincerely, Sabrena Tuy
On Mon, Sep 4, 2023 at 1:22 AM Michael Mc Laughlin michael@thecurate.com wrote:
Hi Sabrena,
Once you get it working the WSL option works flawlessly but it can be tricky to get over the first hurdle. The help instructions are written assuming that you are fluent in Linux.
Check which version of Ubuntu you have. When you start WSL it will give you a message like:
Welcome to Ubuntu 22.04.2
and download the corresponding release of Freesurfer 7.4.1 The help doesn't tell you how to download or install the package and I'm afraid I have forgotten the commands.
Maybe someone else can chime in here?
I use VcXsrv for my X-server graphics interface.
Michael
On Sun, Sep 3, 2023 at 7:23 AM fsbuild fsbuild@contbay.com wrote:
External Email - Use CautionHello Sabrena,
We have some notes posted about setting up WSL on the wiki page under,
*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1DvuxfuIADIqRZ6VQafq-8mwWrBtsLKvPBjo6mfAc5lZHDj... https://secure-web.cisco.com/1c9KrekHizcdGhd-EUpY8z6zQtrZ7Hnb3DsudqV1c_pPEjJ1H75BRvca6NRs_TRT6TsXulVKkhed9uxHkgEBBOLR3pJ1QadfUPK9NxzguGJR-9ZEdXbrbGgTiLMC3In-V_1eOTIHf0B8pxWbJcjhkapSbXWjqaraZgKCwigULr2pOXXSZBffwbUX8kMFxbI7lqhsp09hkOwjZUWEqA-D_kikevtPV4pp-1tyt230wlx3hRfEFEslJpansh_4yBibdUHv9pMqyR_dNZwNRQpWAWtaSfk1ChYf1ej-pW-xOjqtkmBb1HCTHC9QEg2eD1QI2kiko5M4aVy3zO_PYwX3pVg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2F%2FFS7_wsl
You are probably running some version of WSL version 2 (WSL2), but since WSL can change w/o notice, we can’t guarantee our notes work for every Windows 11 (or Windows 10) setup. See the section there "Setup and Install WSL version 2” including the link to the MS documentation. If you can get WSL working and login to its Ubuntu Linux terminal window, then we can direct you how to install the freesurfer 7.4.1 release.
If you want to run freeview to view brain images with WSL, you will also need to install a 3rd party X-server like XMing to MobaXterm as well on your Windows system. Some users have not been able to get freeview to work on their system after consulting our wiki page notes.
An alternative to using WSL is to use a different virtualization application like VirtualBox. Some users find VirtualBox easier to setup and manage especially compared to getting WSL to work with freeview and viewing images. You would download and install the VirtualBox application on your Windows machine, and then download and install our Ubuntu 18 Linux OS image with Freesurfer pre-installed. The notes for that are under,
https://secure-web.cisco.com/1jWUuYP_NyXX6dHFSwxDkGxAexM-6-cgbmtKls-isXwP8Al...
We can send you the codes to unlock the VirtualBox image and login. With the VirtualBox setup, there is no additional 3rd party X-server setup needed in order to view images with freeview.
- R.
Begin forwarded message:
*From: *Sabrena Tuy stuy2746@sdsu.edu *Subject: **[Freesurfer] Installation Support for Windows (WSL Linux)* *Date: *September 2, 2023 at 20:18:48 EDT *To: *freesurfer@nmr.mgh.harvard.edu *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu
External Email - Use CautionHello,
I am a student in an MRI lab at SDSU that uses Freesurfer religiously, and unfortunately, I am a Windows (11) user. I have scrolled mindlessly and have made some progress on beginning the installation for Freesurfer, but I have come to a complete standstill.. Is there any way you can help me install the program onto my PC since I will need to use it for my lab work?
Sincerely, Sabrena Tuy
Sincerely, Sabrena Tuy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1v4K7SGZA2qF_MnLs9BcF3yYJ5hg9YdIgkcz_1d2UGMlnoh...
-- This is a copy of a message which has been originally sent to: "To" field: freesurfer@nmr..mgh.harvard.edu "Copy" field: stuy2746@sdsu.edu The message has been sent by https://secure-web.cisco.com/1fN38VTBIkQoYFgUT_mPHx7HAEgZZ06-I2kTLfArjUmXlCA... and the used account name was: SSL
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1v4K7SGZA2qF_MnLs9BcF3yYJ5hg9YdIgkcz_1d2UGMlnoh...
Please note that this e-mail is not secure (encrypted). If you do not
wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
freesurfer@nmr.mgh.harvard.edu
-
fsbuild -
Michael Mc Laughlin -
Sabrena Tuy