Great, thanks!

2013/11/6 Juan Eugenio Iglesias iglesias@nmr.mgh.harvard.edu

Dear Joana, at this point, a "true" longitudinal version of the subfield segmentation is not available. However, we have noticed that you can get slightly better (more stable) results by segmenting the subfields in the longitudinally processed timepoints - rather than the original, cross-sectionally analyzed subjects that you used to create the base. In other words: rather than running recon-all -subjid tpN -hippo-subfields you should run recon-all -subjid tpN.long.base -hippo-subfields Cheers, Eugenio

On 11/06/2013 11:32 AM, Joana Braga Pereira wrote:

Dear all,

I'm interested in assessing the changes in the volumes of hippocampal subfields between 2 time points.

Can I use the longitudinal pipeline of Freesurfer and add the -hippo-subfields flag to the longitudinal runs of the 2 time points?

Thanks!

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Juan Eugenio Iglesias, PhDhttp://www.jeiglesias.comiglesias@nmr.mgh.harvard.edu Athinoula A. Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, Massachusetts 2129 U.S.A.

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