While running recon-all autorecon3 I got the following error message.
mri_ca_label GCA sequential renormalization: label 28 not consistently computed.
not using caudate to estimate GM means setting label Left_VentralDC based on Right_VentralDC = 1.17 x + 0 estimating mean gm scale to be 1.02 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.21 x + 0.0 Left_Pallidum too bright - rescaling by 1.004 (from 1.000) to 106.4 (was 106.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Darwin pmc10113.nottingham.ac.uk 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
recon-all exited with ERRORS at Sat Dec 26 19:10:16 GMT 2009
On visual inspection using tkmedit , I couldn¹t see any obvious differences in brightness. Is there any way this could be manual edited and rerun?
_______________________________________________________ Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
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Lena,
This message is not an error, and mri_ca_label should not stop. You can get a fixed mri_ca_label here:
http://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/
Nick
On Tue, 2009-12-29 at 07:07 +0000, Lena Palaniyappan wrote:
While running recon-all –autorecon3 I got the following error message.
mri_ca_label GCA sequential renormalization: label 28 not consistently computed.
not using caudate to estimate GM means setting label Left_VentralDC based on Right_VentralDC = 1.17 x + 0 estimating mean gm scale to be 1.02 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.21 x + 0.0 Left_Pallidum too bright - rescaling by 1.004 (from 1.000) to 106.4 (was 106.0) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt Darwin pmc10113.nottingham.ac.uk 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
recon-all exited with ERRORS at Sat Dec 26 19:10:16 GMT 2009
On visual inspection using tkmedit , I couldn’t see any obvious differences in brightness. Is there any way this could be manual edited and rerun?
Lena Palaniyappan Clinical Lecturer & Honorary StR | Division of Psychiatry ( University of Nottingham) South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH
This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation.
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-
Lena Palaniyappan -
Nick Schmansky