Hello,
I am trying to unpack dicom files for a specific subject. THese files are located at:
/space/archive/166/siemens/Avanto-25096-20080621-122038-263000
I have tried both the unpacksdcmdir command as well as a dicom import directly into SPM. The unpacksdcmdir command did appear to work but there was only 1 functional scan unpacked. When I did the SPM import, the structurals seemed to import but again the functionals looked really strange. They just look like a white diagonal line going through the black background.
These files may just be unusable but I wanted to ask if you had any input before I give up. Thanks for your help.
Sincerely,
Adrienne McCallister
What is your cmd line? Where did you run it from? What's the terminal output? To help us help you, please follow the suggestions in surfer.nmr.mgh.harvard.edu/fswiki/BugReporting when reporting a problem.
thanks!
doug
On Wed, 27 Aug 2008, Adrienne McCallister wrote:
Hello,
I am trying to unpack dicom files for a specific subject. THese files are located at:
/space/archive/166/siemens/Avanto-25096-20080621-122038-263000
I have tried both the unpacksdcmdir command as well as a dicom import directly into SPM. The unpacksdcmdir command did appear to work but there was only 1 functional scan unpacked. When I did the SPM import, the structurals seemed to import but again the functionals looked really strange. They just look like a white diagonal line going through the black background.
These files may just be unusable but I wanted to ask if you had any input before I give up. Thanks for your help.
Sincerely,
Adrienne McCallister
Hi Adrienne,
What is the command line you used? You have to specify each bold run, ie
unpacksdcmdir -src <dcm directory> -targ <analysis directory> -run <#> -run <#> bold -run <#> bold
-src is the dicom source directory -targ is the <subid> directory you created -run flags which bold sequences you will be processing
Hope that helps.
Marlisa
Hello,
I am trying to unpack dicom files for a specific subject. THese files are located at:
/space/archive/166/siemens/Avanto-25096-20080621-122038-263000
I have tried both the unpacksdcmdir command as well as a dicom import directly into SPM. The unpacksdcmdir command did appear to work but there was only 1 functional scan unpacked. When I did the SPM import, the structurals seemed to import but again the functionals looked really strange. They just look like a white diagonal line going through the black background.
These files may just be unusable but I wanted to ask if you had any input before I give up. Thanks for your help.
Sincerely,
Adrienne McCallister _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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