Hi Adrienne,

What is the command line you used? You have to specify each bold run, ie

unpacksdcmdir -src <dcm directory> -targ <analysis directory> -run <#> -run <#> bold -run <#> bold

-src is the dicom source directory -targ is the <subid> directory you created -run flags which bold sequences you will be processing

Hope that helps.

Marlisa

Hello,

I am trying to unpack dicom files for a specific subject. THese files are located at:

/space/archive/166/siemens/Avanto-25096-20080621-122038-263000

I have tried both the unpacksdcmdir command as well as a dicom import directly into SPM. The unpacksdcmdir command did appear to work but there was only 1 functional scan unpacked. When I did the SPM import, the structurals seemed to import but again the functionals looked really strange. They just look like a white diagonal line going through the black background.

These files may just be unusable but I wanted to ask if you had any input before I give up. Thanks for your help.

Sincerely,

Adrienne McCallister _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer