Hello All,
I am geting the following error: see below:
Did I miss something in the installation? Sorry if I have.
Thank you for your help in advance.
Liat
---------------------------------------------------------------------
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0
Kernel info: Darwin 10.8.0 i386
--------------------------------------------------------------------- Please include the following additional information in your report:
1) subject name -2037
2) the entire command-line executed
recon-all -i -cw256 MR000001 -all -s 2037
3) the error message generated [psmacll1:P1192_freesurfer/2037/7_YNICT1A] liat% recon-all -i -cw256 MR000001 -all -s 2037 ERROR: cannot find -cw256 Darwin psmacll1.york.ac.uk 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 recon-all -s exited with ERRORS
*Hi Liat, you need to change the order of your arguments to recon-all -cw256 **-i **MR000001 -all -s 2037 doug * On 06/22/2012 11:47 AM, Liat Levita wrote:
Hello All,
I am geting the following error: see below:
Did I miss something in the installation? Sorry if I have.
Thank you for your help in advance.
Liat
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0
Kernel info: Darwin 10.8.0 i386
Please include the following additional information in your report:
subject name -*2037*
the entire command-line executed
*recon-all -i -cw256 MR000001 -all -s 2037* 3) the error message generated *[psmacll1:P1192_freesurfer/2037/7_YNICT1A] liat% recon-all -i -cw256 MR000001 -all -s 2037* *ERROR: cannot find -cw256* *Darwin psmacll1.york.ac.uk http://psmacll1.york.ac.uk/ 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386* *recon-all -s exited with ERRORS*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Liat
after the -i you need to give the input volume for the recon.
cheers, Bruce On Fri, 22 Jun 2012, Liat Levita wrote:
Hello All,
I am geting the following error: see below:
Did I miss something in the installation? Sorry if I have.
Thank you for your help in advance.
Liat
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0
Kernel info: Darwin 10.8.0 i386
Please include the following additional information in your report:
subject name -2037
the entire command-line executed
recon-all -i -cw256 MR000001 -all -s 2037 3) the error message generated [psmacll1:P1192_freesurfer/2037/7_YNICT1A] liat% recon-all -i -cw256 MR000001 -all -s 2037 ERROR: cannot find -cw256 Darwin psmacll1.york.ac.uk 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 recon-all -s exited with ERRORS
freesurfer@nmr.mgh.harvard.edu