Yep, use tkregister2 --s subject --fstal there are instructions in the trouble shooting tutorial on the wiki. doug

Carolina Valencia wrote:

Hi FSexperts,

I have a case of a child with /Hydrocephalus and cortical dysplasia, the patient has a subcutaneous ventriculo-peritoneal shunt that produces an artifice in all MRI sequences, I try to recon-all but it exit with ERROR/ #-------------------------------------------- #@# Talairach Failure Detection Thu Jul 7 11:03:21 COT 2011 /home/cvalencia/freesurfer/subjects/volumetria/hptu_vol04/hptu_vol04/mri

talairach_afd -T 0.005 -xfm transforms/talairach.xfm

ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Linux cvalencia-Precision-WorkStation-T3400 2.6.35-30-generic-pae #54-Ubuntu SMP Tue Jun 7 20:28:33 UTC 2011 i686 GNU/Linux

recon-all -s hptu_vol04 exited with ERRORS at Thu Jul 7 11:03:21 COT 2011

is possible to process it in automated fashion?

Thanks,

Best regards,

Carolina

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