Hi Leonardo,

can you send the actual command? You should only replace the <> part, not the -i in the cmdline (same for the -s).

Bruce On Thu, 17 Mar 2011, leonardo kay wrote:

Hi

I have been trying to import my data and create a subject directory using the following command:

recon-all -i <path-to-first-structural> -s <subjid>

replacing <path-to-first-structural> with the path where my T1 structural nifti is allocated, and -s <subjid> with the name of the subject (susu), which is supposed to be the name of the directory too.

But after running this command i receive this message:

*recon-all /home/virtualuser/apps/freesurfer/subjects susu ERROR: Flag /home/virtualuser/apps/freesurfer/subjects unrecognized. /home/virtualuser/apps/freesurfer/subjects susu Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC 2009 i686 GNU/Linux

recon-all -s exited with ERRORS at Thu Mar 17 14:49:33 EDT 2011*.

Can anyone help me determining the problem.

Thanks in advance

Leo