you can always look in the recon-all script - the atlas (*.gca) file we use is listed in there.

cheers Bruce On Thu, 13 Oct 2016, GAJENDRA KATUWAL (RIT Student) wrote:

According to this website https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferVersion3, Freesurfer v 3.0 uses Aseg atlas for the segmentation of subcortical structures. It does not explicitly mention anything about Freesurfer v5.3 though.

On Thu, Oct 13, 2016 at 8:02 AM, AKUDJEDU, THEOPHILUS T.AKUDJEDU1@nuigalway.ie wrote:

  Hi All,


  Which default atlas does FreeSurfer 5.3 use for the segmentation
  of subcortical structures?


  Thanks


  Theo

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