Hi Bruce,

Here are command lines I used:

recon-all -s test -i ./sample-001.mgz -i ./sample-002.mgz -autorecon1 recon-all -s test -subcortseg

The error occurred in the final process, i.e. calculation of stats on the automatic segmentation.

Thanks, Akio

2013/3/19 Bruce Fischl fischl@nmr.mgh.harvard.edu

Hi Akio

what was your full command line?

cheers Bruce

On Mon, 18 Mar 2013, A. Yamamoto wrote:

Hi,

...

After upgrading to FreeSurfer 5.2.0, the command with "-subcortseg" flag exited with the following error.

MRISread(/usr/local/**freesurfer/5.2.0/dist/** subjects/test/surf/lh.white): could not open file

I confirmed that the "-autorecon1" stage finished without error. In v5.1.0 it worked fine, so I'm wondering if there is any change in mri_segstats??

FYI, I have attached the last part of recon-all.log file.

Thanks for your help. Akio

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