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Hi,
can you open those surface files (both lh.pial and rh.pial of the subject for which it fails) in freeview to check whether they are OK?
Does it fail only for a single subject or for all subjects you tried?
Best,
Tim
On June 26, 2019 at 12:31 AM Gwang-Won Kim kw0212@nate.com wrote:
External Email - Use Caution
Dear there,
I tried to process "recon-all -s <subject> -localGI" But, there were messages below. Thank you.
< M A T L A B (R) > Copyright 1984-2017 The MathWorks, Inc. R2017b (9.3.0.713579) 64-bit (glnxa64) September 14, 2017
For online documentation, see http://www.mathworks.com/support For product information, visit www.mathworks.com.
FREESURFER_READ_SURF [v 1.2 ]
...reading surface file: lh.pial ...reading triangle file {Error using fread Invalid size.
Error in freesurfer_read_surf (line 126) faces = fread(fid, Nfaces*3, 'int32');
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial); }
ERROR: find_corresponding_center_FSformat did not complete successfully! @#@FSTIME 2019:06:25:17:53:05 mris_compute_lgi N 2 e 214.78 S 11.73 U 120.56 P 61% M 1765668 F 181 R 817088 W 0 c 28677 w 1859 I 34640 O 36752 L 9.66 9.41 9.10 @#@FSLOADPOST 2019:06:25:17:56:40 mris_compute_lgi N 2 10.05 9.93 9.38 Linux gwkim 2.6.32-754.14.2.el6.x86_64 #1 SMP Tue May 14 19:35:42 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 121202_FD49RU exited with ERRORS at Tue Jun 25 17:56:40 KST 2019
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
freesurfer@nmr.mgh.harvard.edu
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Gwang-Won Kim -
Tim Schäfer