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Hi everyone, I have a problem with freeview. My university created for me a virtual machine in a small analysis cluster. Unfortunately, they installed Debian 4.19.98. I read that freeview has some problems with Debian, and in fact I am not able to open it. Unfortunately I need to visualize the data because we are conducting an anatomical study with patients with lesions. All the processes I ran until now, like automatic segmentation and surface generation like recon all, worked perfectly, but I need to visualize the data. Do you have suggestions to solve this problem? Thanks
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If you start it from a shell, do you see any error message? If so, could you send it?
Also 4.19.98 most likely is the Linux kernel version, not the Debian release. Could you also send the output of the following command:
cat /etc/os-release
Thanks,
Tim
On May 19, 2020 at 6:14 PM Gian Marco Duma gianmarco.duma@phd.unipd.it wrote:
External Email - Use CautionHi everyone, I have a problem with freeview. My university created for me a virtual machine in a small analysis cluster. Unfortunately, they installed Debian 4.19.98. I read that freeview has some problems with Debian, and in fact I am not able to open it. Unfortunately I need to visualize the data because we are conducting an anatomical study with patients with lesions. All the processes I ran until now, like automatic segmentation and surface generation like recon all, worked perfectly, but I need to visualize the data. Do you have suggestions to solve this problem? Thanks _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
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Hi, I guess it is a problem with libpng. Freesurfer 6 was build with 1.2.7 which is not available in Debian buster anymore. Version 7.1 is working.
Joerg
External Email - Use CautionIf you start it from a shell, do you see any error message? If so, could you send it?
Also 4.19.98 most likely is the Linux kernel version, not the Debian release. Could you also send the output of the following command:
cat /etc/os-release
Thanks,
Tim
On May 19, 2020 at 6:14 PM Gian Marco Duma gianmarco.duma@phd.unipd.it wrote:
External Email - Use CautionHi everyone, I have a problem with freeview. My university created for me a virtual machine in a small analysis cluster. Unfortunately, they installed Debian 4.19.98. I read that freeview has some problems with Debian, and in fact I am not able to open it. Unfortunately I need to visualize the data because we are conducting an anatomical study with patients with lesions. All the processes I ran until now, like automatic segmentation and surface generation like recon all, worked perfectly, but I need to visualize the data. Do you have suggestions to solve this problem? Thanks _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Gian Marco Duma -
Jörg Stadler -
Tim Schäfer