These libs are included with Freesurfer, and should be setup to use automatically as part of the setup script:

source $FREESURFER_HOME/SetUpFreeSurfer.csh

You should see paths to the libs displayed here:

echo $LD_LIBRARY_PATH

Which freesurfer distribution are you using?

For Fedora Core release 2, our RedHat 9 distribution will work, but the Centos 4 distribution will not.

Nick

On Mon, 2006-10-02 at 11:42 -0700, xingfeng lee wrote:

Dear FreeSurfer Experts,

Where can I find and install the missing 4 lib for mis_flatten?

libtix8.1.8.3.so => not found libtk8.4.so => not found

libgsl.so.0 => not found libgslcblas.so.0 => not found

[xingfeng@ambrose bin]$ pwd /usr/local/freesurfer/bin [xingfeng@ambrose bin]$ ldd tksurfer linux-gate.so.1 => (0x55000000) libtix8.1.8.3.so => not found libtk8.4.so => not found libtcl8.4.so => /usr/lib/libtcl8.4.so (0x00a69000) libglut.so.3 => /usr/lib/libglut.so.3 (0x5500f000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x007e8000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x007f2000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x00394000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x0095b000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x009ec000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x006fb000) libGL.so.1 => /usr/X11R6/lib/libGL.so.1 (0x00965000) libgsl.so.0 => not found libgslcblas.so.0 => not found libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x004a1000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x074c7000) libz.so.1 => /usr/lib/libz.so.1 (0x007d5000) libm.so.6 => /lib/tls/libm.so.6 (0x006d0000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x07456000) libc.so.6 => /lib/tls/libc.so.6 (0x005b3000) libdl.so.2 => /lib/libdl.so.2 (0x006f5000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x07251000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x007c5000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x00101000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00560000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0x0088a000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0x008de000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x0059a000) [xingfeng@ambrose bin]$ cat /etc/redhat-release Fedora Core release 2 (Tettnang) [xingfeng@ambrose bin]$ uname -m i686

Thanks for the help in advance.

All the best, Li

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