Hi David

it works fine for me. The infinte loop happened when the brainmask was completely empty I believe, although we fixed it in any case. Can you check the brainmask? I can also send you an updated mri_cc if you want

cheers Bruce

On Mon, 12 Oct 2015, Slater David wrote:

Hi Bruce,

I’ve also run into the ‘infinite loop problem’ mentioned here:https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-February/027948. html

30 of my 632 subject’s experienced this problem. In your post you asked for an example file which generates this failure. I have included such a file as an attachment along with the full job log up to the point where it hung.

I am running  freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 and use the simple command  recon-all -subjid <SubjectID> -all.

Cheers,

David