Hello,
I sent a few jobs to launchpad (FreeSurfer segmentation) and they exited with an exit=1, this is the error:
"ERROR: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version"
I switched from Fs 6 to FS 7.1.1, how do I change the fsaverage link?
Any help is appreciated. Thank you
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Pain and Neuroinflammation Imaging Laboratory |
Ratai Lab for Clinical Spectroscopy |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 | Charlestown, MA 02129
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
www.nmr.mgh.harvard.eduhttp://www.nmr.mgh.harvard.edu
Source 7.1.1 Go into $SUBJECTS_DIR rm fsaverage ln -s $FREESURFER/subjects/fsaverage that should do it
On 12/22/2020 8:47 AM, Weerasekera, Akila wrote: Hello,
I sent a few jobs to launchpad (FreeSurfer segmentation) and they exited with an exit=1, this is the error:
"ERROR: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version"
I switched from Fs 6 to FS 7.1.1, how do I change the fsaverage link?
Any help is appreciated. Thank you
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Pain and Neuroinflammation Imaging Laboratory |
Ratai Lab for Clinical Spectroscopy |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 | Charlestown, MA 02129
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
www.nmr.mgh.harvard.eduhttp://www.nmr.mgh.harvard.edu
https://scholar.harvard.edu/loggia
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