Source 7.1.1 Go into $SUBJECTS_DIR rm fsaverage ln -s $FREESURFER/subjects/fsaverage that should do it

On 12/22/2020 8:47 AM, Weerasekera, Akila wrote: Hello,

I sent a few jobs to launchpad (FreeSurfer segmentation) and they exited with an exit=1, this is the error:

"ERROR: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version"

I switched from Fs 6 to FS 7.1.1, how do I change the fsaverage link?

Any help is appreciated. Thank you

Akila Weerasekera, PhD | Postdoctoral Research Fellow

Pain and Neuroinflammation Imaging Laboratory |

Ratai Lab for Clinical Spectroscopy |

Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 | Charlestown, MA 02129

Mobile: (781) 820 4501

aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu

www.nmr.mgh.harvard.eduhttp://www.nmr.mgh.harvard.edu

https://scholar.harvard.edu/loggia

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