CUDA Error in file '/space/freesurfer/build/minerva/stable/dev/include/volumegpu_impl.hpp'
Hi. folks.
I'm trying to execute new cuda binaries in freeserfer 5.0.
When I tried to run it (e.g. mri_em_register_cuda), I got the following error.
============================== ========================================================= Acquiring CUDA device Using default device CUDA device: GeForce 8500 GT aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading '/home/yed/Data/freesurfer_subjects/bert/mri/nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 CUDA Error in file '/space/freesurfer/build/minerva/stable/dev/include/volumegpu_impl.hpp' on line 104 : invalid argument. ========================================================================================
What am I missing? Please help me out.
I appreciate your time.
Regards, Dong
8500GT is Cuda Compute Capability 1.1 (It won't probably work in this version of FreeSurfer) --------------------------------------------------------------------- Pedro Paulo de Magalhães Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://www.netfilter.com.br/mobile
On Wed, Aug 25, 2010 at 12:02, DongHye Ye eastsun3@gmail.com wrote:
Hi. folks.
I'm trying to execute new cuda binaries in freeserfer 5.0.
When I tried to run it (e.g. mri_em_register_cuda), I got the following error.
==============================
Acquiring CUDA device Using default device CUDA device: GeForce 8500 GT aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading '/home/yed/Data/freesurfer_subjects/bert/mri/nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros)
spacing=8, using 3481 sample points, tol=1.00e-05...
register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 CUDA Error in file '/space/freesurfer/build/minerva/stable/dev/include/volumegpu_impl.hpp' on line 104 : invalid argument.
========================================================================================
What am I missing? Please help me out.
I appreciate your time.
Regards, Dong
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
we will try to post a new tarball of _cuda binaries that are 1.1 compatible this week (once our file systems are back in shape...).
n.
On Wed, 2010-08-25 at 12:07 -0300, Pedro Paulo de Magalhães Oliveira Junior wrote:
8500GT is Cuda Compute Capability 1.1 (It won't probably work in this version of FreeSurfer)
Pedro Paulo de Magalhães Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://www.netfilter.com.br/mobile
On Wed, Aug 25, 2010 at 12:02, DongHye Ye eastsun3@gmail.com wrote: Hi. folks.
I'm trying to execute new cuda binaries in freeserfer 5.0. When I tried to run it (e.g. mri_em_register_cuda), I got the following error. ============================== ========================================================= Acquiring CUDA device Using default device CUDA device: GeForce 8500 GT aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading '/home/yed/Data/freesurfer_subjects/bert/mri/nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 CUDA Error in file '/space/freesurfer/build/minerva/stable/dev/include/volumegpu_impl.hpp' on line 104 : invalid argument. ======================================================================================== What am I missing? Please help me out. I appreciate your time. Regards, Dong _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Pedro Paulo de Magalhães Oliveira Junior