I'm using 'freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0' and I have a problem.
I used a command 'tksurfer fsaverage lh inflated -ov surfdata' on teminal.
Then, I used 'configure overlay display' in veiw>configure>overlay to set proper threshold.
I could set approximate threshold values easily by mouse.
But I wanted to set the values by keyboard inputs(exact numbers).
I think there is a way to type numbers(in my case, it is unable to type any words on the edit boxes).
How can I do?
Hi Seulgi
you can specify the fthresh and and slope on the command line using:
tksurfer ... -fthresh <threshold> -fslope <slope>
or alternatively, both the min and max using
tksurfer ... -fminmax <threshold> <max>
where <max> is the value at which the color saturates. Or you can set the thresholds based on rank ordering of the values using percentiles instead of absolute values:
-pthresh <min> <mid> <max>
cheers Bruce
On Sat, 6 Oct 2012, Seulgi Eun wrote:
I'm using 'freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0' and I have a problem.
I used a command 'tksurfer fsaverage lh inflated -ov surfdata' on teminal.
Then, I used 'configure overlay display' in veiw>configure>overlay to set proper threshold.
I could set approximate threshold values easily by mouse.
But I wanted to set the values by keyboard inputs(exact numbers).
I think there is a way to type numbers(in my case, it is unable to type any words on the edit boxes).
How can I do?
freesurfer@nmr.mgh.harvard.edu