Hi Sooyun,

Which is the sky blue region you are referring to? Can you place your fslview cursor in the location where you think is missing the label?

Can you visually inspect the original Choi's parcellation to see if the label is also missing at the corresponding MNI152 location? If the label is not missing, then perhaps your transformation is not doing its job, which I suspect might be the problem since the loose mask in Choi's parcellation is already pretty loose.

Regards, Thomas

On Mon, Feb 10, 2014 at 12:20 PM, 조수연 syduam2452@kaist.ac.kr wrote:

Hi, all.

I'm trying to apply Choi's parcellations onto my subjects' data. I used the 7-Network loose mask but it turns out that even the loose mask isn't capable of covering up the ROI.

Is there a way I can further "expand" the loose mask and make it "looser"?

The uncovered areas of my subject's image are colored skyblue. The rest are parcellated segments of Choi's image.

FYI Choi's FreeSurfer grid images were linearly transformed by concat matrix which shifts FreeSurfer grid to Standard MNI152 grid to our subject's grid.

Thanks.

Best regards, Sooyun.

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