Good morning,
I get the following error when running recon-all -all -parallel on my OSX Sierra (10.12.1) iMac (Note: the same subject completes w/o error when NOT using the -parallel flag)
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Volumes/ToolsMac/freesurfer6.0/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
I am attaching both the /usr/lib/libSystem.B.dylib file from my computer along with the subject's recon-all.log file.
My system:
Late 2012 iMac with an i7 processor, 24GB RAM, running OSX 10.12.
Sincerely,
Mira
_______________________________________________
Mira Michelle Raman
Lead Scientific Programmer
The Center for Interdisciplinary Brain Sciences Research
Stanford University
401 Quarry Rd, Ste. 1356
Hello Mira,
I've only ever seen this error when installing version 6.0 on top of a preexisting freesurfer installation. Could you try completely removing the /Applications/freesurfer directory and reinstalling 6.0? If that doesn't work please upload the subjects folder and I will take a look.
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
Thanks.
-Zeke
On 02/15/2017 03:02 PM, Mira Michelle Raman wrote:
Good morning,
I get the following error when running recon-all -all -parallel on my OSX Sierra (10.12.1) iMac (Note: the same subject completes w/o error when NOT using the -parallel flag)
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Volumes/ToolsMac/freesurfer6.0/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
I am attaching both the /usr/lib/libSystem.B.dylib file from my computer along with the subject's recon-all.log file.
My system:
Late 2012 iMac with an i7 processor, 24GB RAM, running OSX 10.12.
Sincerely,
Mira
Mira Michelle Raman
Lead Scientific Programmer
The Center for Interdisciplinary Brain Sciences Research
Stanford University
401 Quarry Rd, Ste. 1356
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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