Do the surfaces from recon-all look ok? Bbregister uses the surface to register the DWI to the structural.

On Tue, 8 Oct 2013, stdp82@virgilio.it wrote:

Hi list,

I'm performing trac-all but I'm noting some coregistration error. I have try to run separately each step. When -masks was finished, cortex masks and other file were wrongly coregistared on DTI. In the next step also the dti_FA and other maps are wrong becouse some parts are lacking.

Please see also the attachments.

Thanks,

Stefano