I am trying to use tksurfer to script overlay of a label + functional map onto an fsaverage5 surface.
In particular, I want to set the label to "fill" and color it red.
I have:
set labelstyle 0 labl_set_color 0 255 0 0
As you can see below, the output of label_print_list shows that the color of the label should be "255 0 0 " but it looks white in the output image.
Am I missing something? Thanks
------------ subject is fsaverage5 hemi is lh surface is inflated
Label 0 Name: lh.17Networks_LH_ContB_PFClv.label, 109 vertices Structure: -1 Color: 255 0 0 Visible: 1 Bounds: x -20.879234 12.792567 y -4.000000 109.853737 z -4.033233 4.040778
Hi Justin
try unselecting the label with:
labl_select -1
cheers Bruce On Wed, 30 Nov 2011, Justin Baker wrote:
I am trying to use tksurfer to script overlay of a label + functional map onto an fsaverage5 surface.
In particular, I want to set the label to "fill" and color it red.
I have:
set labelstyle 0 labl_set_color 0 255 0 0
As you can see below, the output of label_print_list shows that the color of the label should be "255 0 0 " but it looks white in the output image.
Am I missing something? Thanks
subject is fsaverage5 hemi is lh surface is inflated
Label 0 Name: lh.17Networks_LH_ContB_PFClv.label, 109 vertices Structure: -1 Color: 255 0 0 Visible: 1 Bounds: x -20.879234 12.792567 y -4.000000 109.853737 z -4.033233 4.040778
Hi Bruce,
Thanks. Some progress! That resulted in the label border turning red, but the fill is still white. Any other thoughts?
Cheers, Justin
On Wed, Nov 30, 2011 at 2:54 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
Hi Justin
try unselecting the label with:
labl_select -1
cheers Bruce
On Wed, 30 Nov 2011, Justin Baker wrote:
I am trying to use tksurfer to script overlay of a label + functional map onto an fsaverage5 surface.
In particular, I want to set the label to "fill" and color it red.
I have:
set labelstyle 0 labl_set_color 0 255 0 0
As you can see below, the output of label_print_list shows that the color of the label should be "255 0 0 " but it looks white in the output image.
Am I missing something? Thanks
subject is fsaverage5 hemi is lh surface is inflated
Label 0 Name: lh.17Networks_LH_ContB_PFClv.**label, 109 vertices Structure: -1 Color: 255 0 0 Visible: 1 Bounds: x -20.879234 12.792567 y -4.000000 109.853737 z -4.033233 4.040778
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What happens if you right click on the surface then?
On Dec 4, 2011, at 8:17 PM, Justin Baker justintbaker@gmail.com wrote:
Hi Bruce,
Thanks. Some progress! That resulted in the label border turning red, but the fill is still white. Any other thoughts?
Cheers, Justin
On Wed, Nov 30, 2011 at 2:54 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Justin
try unselecting the label with:
labl_select -1
cheers Bruce
On Wed, 30 Nov 2011, Justin Baker wrote:
I am trying to use tksurfer to script overlay of a label + functional map onto an fsaverage5 surface.
In particular, I want to set the label to "fill" and color it red.
I have:
set labelstyle 0 labl_set_color 0 255 0 0
As you can see below, the output of label_print_list shows that the color of the label should be "255 0 0 " but it looks white in the output image.
Am I missing something? Thanks
subject is fsaverage5 hemi is lh surface is inflated
Label 0 Name: lh.17Networks_LH_ContB_PFClv.label, 109 vertices Structure: -1 Color: 255 0 0 Visible: 1 Bounds: x -20.879234 12.792567 y -4.000000 109.853737 z -4.033233 4.040778
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu