Hi, I am trying to use mri_convert to convert Siemens .IMA files to COR files. I have tried a few different ways and none seem to be working. Here is what I've tried and the error messages. Do you have any advice?
mri_convert -it siemens </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it siemens </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... ERROR: could not parse </path/to/IMA/dir> ERROR: siemensRead(): </path/to/IMA/dir>
mri_convert -it siemens_dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it siemens_dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... ERROR: </path/to/IMA/dir> is not a siemens DICOM file INFO: loading series header info. Segmentation fault
mri_convert -it dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... no DICOM files found. Exit
Hi Michele,
don't give it the path to the IMA dir, just give it one file in the series you want to convert - it will find the rest.
Bruce
On Thu, 7 Apr 2005 mperry@ucsd.edu wrote:
Hi, I am trying to use mri_convert to convert Siemens .IMA files to COR files. I have tried a few different ways and none seem to be working. Here is what I've tried and the error messages. Do you have any advice?
mri_convert -it siemens </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it siemens </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... ERROR: could not parse </path/to/IMA/dir> ERROR: siemensRead(): </path/to/IMA/dir>
mri_convert -it siemens_dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it siemens_dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... ERROR: </path/to/IMA/dir> is not a siemens DICOM file INFO: loading series header info. Segmentation fault
mri_convert -it dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig>
mri_convert -it dicom </path/to/IMA/dir> <$SUBJECTS_DIR/subjid/mri/orig> reading from </path/to/IMA/dir>... no DICOM files found. Exit
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