Hi Rujing, You can use a tcl script to take several snapshots in tkmedit, then you could use the convert command (part of ImageMagick distro) or something similar to create an animated gif. With the convert command you would use the -adjoin and -delay flags. You could use one of the tcl scripts from the QA tools scripts as a good start (e.g. snap_tkmedit.tcl).
You could also get multiple snapshots with freeview using command line flags and a shell script. -Louis
On Sat, 30 Nov 2013, Rujing Zha wrote:
Dear all, I want to see the slices as a shape of movie in tkmedit. Do anyone can tell me how to do it? Thanks. All the best. 2013-11-30
Rujing Zha
Hi Louis, Thanks for your helpful suggestion. Maybe I just click the "slice -/+" module if I want to view all the slices of one subject's volume in tkmedit. But I do not want to click the button continuously to view all the slices. I want to press a button/key once, then I can see all the slices one by one in a volume automatically; the automatically view will halt if I press a button/key again or other button/key. Thanks in advance. All the best. 2013-12-03
Rujing Zha
发件人：Louis Nicholas Vinke vinke@nmr.mgh.harvard.edu 发送时间：2013-12-03 03:50 主题：Re: [Freesurfer] viewing slices dynamically by tkmedit 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Rujing, You can use a tcl script to take several snapshots in tkmedit, then you could use the convert command (part of ImageMagick distro) or something similar to create an animated gif. With the convert command you would use the -adjoin and -delay flags. You could use one of the tcl scripts from the QA tools scripts as a good start (e.g. snap_tkmedit.tcl).
You could also get multiple snapshots with freeview using command line flags and a shell script. -Louis
On Sat, 30 Nov 2013, Rujing Zha wrote:
Dear all, I want to see the slices as a shape of movie in tkmedit. Do anyone can tell me how to do it? Thanks. All the best.
2013-11-30
Rujing Zha
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Rujing
in tkmedit, try
Tools->Save Tiff Series
this should do what you want
cheers Bruce
On Tue, 3 Dec 2013, Rujing Zha wrote:
Hi Louis, Thanks for your helpful suggestion. Maybe I just click the "slice -/+" module if I want to view all the slices of one subject's volume in tkmedit. But I do not want to click the button continuously to view all the slices. I want to press a button/key once, then I can see all the slices one by one in a volume automatically; the automatically view will halt if I press a button/key again or other button/key. Thanks in advance. All the best. 2013-12-03
Rujing Zha
发件人：Louis Nicholas Vinke vinke@nmr.mgh.harvard.edu 发送时间：2013-12-03 03:50 主题：Re: [Freesurfer] viewing slices dynamically by tkmedit 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu Hi Rujing, You can use a tcl script to take several snapshots in tkmedit, then you could use the convert command (part of ImageMagick distro) or something similar to create an animated gif. With the convert command you
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would use the -adjoin and -delay flags. You could use one of the tcl scripts from the QA tools scripts as a good start (e.g. snap_tkmedit.tcl).
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You could also get multiple snapshots with freeview using command line flags and a shell script. -Louis On Sat, 30 Nov 2013, Rujing Zha wrote:
Dear all, I want to see the slices as a shape of movie in tkmedit. Do anyone can te
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me how to do it? Thanks. All the best. 2013-11-30 _________________________________________________________________________
___
Rujing Zha
The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C... rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Louis Nicholas Vinke -
Rujing Zha