Hi surfers, I am trying to understand the source of the following errors. I know it was not able to locate libXss, but why should mris_volmask need libXss ? I have been told it is a library used by X sceensaver -------------------------------------------------------- mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance RO58NormJB
mris_volmask.bin: error while loading shared libraries: libXss.so.1: cannot open shared object file: No such file or directory Linux compute-0-3.local 2.6.18-53.1.14.el5 #1 SMP Wed Mar 5 11:37:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Dec 8 00:47:13 PST 2008 ------------------------------------------------------------
best regards, sid.
On Thu, Dec 11, 2008 at 3:09 PM, Michael Harms mharms@conte.wustl.eduwrote:
Hello, I'm curious, what algorithm is used for setting the "mid" and "max" threshold values in QDEC when using the "Set Using FDR" button?
And, what does the algorithm do for setting the "min" threshold when no single p-value is significant enough to satisfy the necessary inequality for the specified FDR Rate? In that case, is the resulting "min" just set to the -log10(p) of the most significant p-value?
If easy to implement, it would be handy if the output to the terminal reported the number of vertices with P < than the FDR determined "min" threshold.
cheers, Mike H.
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 Renard Hospital, Room 6615 Tel: 314-747-6173 660 South Euclid Ave. Fax: 314-747-2182 St. Louis, MO 63110 Email: mharms@wustl.edu
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Sid,
I don't know why, but apparently libvtkHybrid.so.5.2 and libvtkRendering.so.5.2 use it (as discovered by running ldd upon all the mris_volmask.bin lib dependencies).
What platform are you running? Probably VTK would need to be built on that.
Nick
On Thu, 2008-12-11 at 16:27 -0800, Siddharth Srivastava wrote:
Hi surfers, I am trying to understand the source of the following errors. I know it was not able to locate libXss, but why should mris_volmask need libXss ? I have been told it is a library used by X sceensaver
mris_volmask --label_left_white 2 --label_left_ribbon 3 -- label_right_white 41 --label_right_ribbon 42 --save_ribbon -- save_distance RO58NormJB
mris_volmask.bin: error while loading shared libraries: libXss.so.1: cannot open shared object file: No such file or directory Linux compute-0-3.local 2.6.18-53.1.14.el5 #1 SMP Wed Mar 5 11:37:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Dec 8 00:47:13 PST 2008
best regards, sid.
On Thu, Dec 11, 2008 at 3:09 PM, Michael Harms mharms@conte.wustl.edu wrote:
Hello, I'm curious, what algorithm is used for setting the "mid" and "max" threshold values in QDEC when using the "Set Using FDR" button? And, what does the algorithm do for setting the "min" threshold when no single p-value is significant enough to satisfy the necessary inequality for the specified FDR Rate? In that case, is the resulting "min" just set to the -log10(p) of the most significant p-value? If easy to implement, it would be handy if the output to the terminal reported the number of vertices with P < than the FDR determined "min" threshold. cheers, Mike H. -- Michael Harms, Ph.D. -------------------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 Renard Hospital, Room 6615 Tel: 314-747-6173 660 South Euclid Ave. Fax: 314-747-2182 St. Louis, MO 63110 Email: mharms@wustl.edu -------------------------------------------------------------------- _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nick, it is x86_64 GNU/LInux . The ldd i did did say that vtk libraries were not found.. i will remember to check them more throughly on subsequent runs... thanks sid.
On Thu, Dec 11, 2008 at 5:36 PM, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:
Sid,
I don't know why, but apparently libvtkHybrid.so.5.2 and libvtkRendering.so.5.2 use it (as discovered by running ldd upon all the mris_volmask.bin lib dependencies).
What platform are you running? Probably VTK would need to be built on that.
Nick
On Thu, 2008-12-11 at 16:27 -0800, Siddharth Srivastava wrote:
Hi surfers, I am trying to understand the source of the following errors. I know it was not able to locate libXss, but why should mris_volmask need libXss ? I have been told it is a library used by X sceensaver
mris_volmask --label_left_white 2 --label_left_ribbon 3 -- label_right_white 41 --label_right_ribbon 42 --save_ribbon -- save_distance RO58NormJB
mris_volmask.bin: error while loading shared libraries: libXss.so.1: cannot open shared object file: No such file or directory Linux compute-0-3.local 2.6.18-53.1.14.el5 #1 SMP Wed Mar 5 11:37:38 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Dec 8 00:47:13 PST 2008
best regards, sid.
On Thu, Dec 11, 2008 at 3:09 PM, Michael Harms mharms@conte.wustl.edu wrote:
Hello, I'm curious, what algorithm is used for setting the "mid" and "max" threshold values in QDEC when using the "Set Using FDR" button? And, what does the algorithm do for setting the "min" threshold when no single p-value is significant enough to satisfy the necessary inequality for the specified FDR Rate? In that case, is the resulting "min" just set to the -log10(p) of the most significant p-value? If easy to implement, it would be handy if the output to the terminal reported the number of vertices with P < than the FDR determined "min" threshold. cheers, Mike H. -- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 Renard Hospital, Room 6615 Tel: 314-747-6173 660 South Euclid Ave. Fax: 314-747-2182 St. Louis, MO 63110 Email: mharms@wustl.edu
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Siddharth Srivastava