HI, I am using freesurfer4.5.0. After processed using recon-all, the ?aparc.annot of each subject contains 36 ROIs (including insula), However the ?aparc.annot of average subject ( make_average_subject) only has 35 ROIs(without insula). Did i do anything wrong or it is a bug? Thanks.
make_average_surface is not using the latest atlas when creating the .annot files. below is a link to a fixed version of make_average_surface which you should copy to your $FREESURFER_HOME/bin directory.
doug
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface
wanlin wrote:
HI, I am using freesurfer4.5.0. After processed using recon-all, the ?aparc.annot of each subject contains 36 ROIs (including insula), However the ?aparc.annot of average subject ( make_average_subject) only has 35 ROIs(without insula). Did i do anything wrong or it is a bug? Thanks.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Thank you very much. But i still run into problems. There are errors indicate that i don't have "curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs" and file. Where could i download it?
On Fri, Aug 6, 2010 at 12:38 AM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
make_average_surface is not using the latest atlas when creating the .annot files. below is a link to a fixed version of make_average_surface which you should copy to your $FREESURFER_HOME/bin directory.
doug
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface
wanlin wrote:
HI, I am using freesurfer4.5.0. After processed using recon-all, the ?aparc.annot of each subject contains 36 ROIs (including insula), However the ?aparc.annot of average subject ( make_average_subject) only has 35 ROIs(without insula). Did i do anything wrong or it is a bug? Thanks.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
freesurfer@nmr.mgh.harvard.edu