maybe you have a bad file? Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz

On 11/11/2015 08:46 PM, Shady El Damaty wrote:

Hi FS-ers,

I'm a bit stuck trying to compute cortical and subcortical statistics using the Buckner 2011 Cerebellum mask. I tried using mri_segstats to generate the .stats file for the provided image:

mri_segstats --seg
Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz
--sum test.summary --ctab-gca Buckner2011_7Networks_ColorLUT.txt
--nonempty
$Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
cwd
cmdline mri_segstats --seg
Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz
--sum test.summary --ctab-gca Buckner2011_7Networks_ColorLUT.txt
--nonempty
sysname  Darwin
hostname Apricot.local
machine  x86_64
user     shady
UseRobust  0
Loading
Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii.gz
Segmentation fault: 11

Clearly I am doing something wrong. Can someone throw a pointer my way about how I can go about computing statistics on my subjects (or any arbitrary volume) using this mask?

In the end I would like to be able to generate a .stats file for every subject in my SUBJECTS_DIR using any custom mask.. how can I make this possible?

Your help would be very greatly appreciated!

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