Freesurfer 6 beta testing: mri_glmfit-sim error - Freesurfer

18 Nov 2016


      Hi Freesurfer Team,
I came across the following error while running mri_glmfit-sim. What is
vwsigmax?
Thanks for your help again.
The full log is as follows:
$Id: FreeSurferEnv.csh,v 1.89 2016/06/09 14:54:31 zkaufman Exp $
Sat Nov 19 02:00:45 GMT 2016
Darwin dhcp-10-240-201-24.cp.wireless.private.cam.ac.uk 14.5.0 Darwin
Kernel Version 14.5.0: Thu Jun 16 19:58:21 PDT 2016;
root:xnu-2782.50.4~1/RELEASE_X86_64 x86_64
MacPro
setenv SUBJECTS_DIR /Volumes/TITAN/cth_wmh_study
FREESURFER_HOME //Users/MacPro/Documents/freesurfer_b6
Original mri_glmfit command line:
cmdline mri_glmfit.bin --y y.mgh --fsgd FSGDs/FSGD_Z_cthVsCTH_AD_age dods
--C Contrasts/C --surf fsaverage lh --cortex --glmdir Glmdirs/ProjectAD
DoSim = 0
UseCache = 1
DoPoll = 0
DoPBSubmit = 0
DoBackground = 0
DiagCluster = 0
gd2mtx = dods
fwhm = 20.927757
CSD
//Users/MacPro/Documents/freesurfer_b6/average/mult-comp-cor/fsaverage/lh/cortex/fwhm21/abs/th30/mc-z.csd
mri_surfcluster --in Glmdirs/ProjectAD/C/sig.mgh --mask
Glmdirs/ProjectAD/mask.mgh --cwsig
Glmdirs/ProjectAD/C/cache.th30.abs.sig.cluster.mgh --sum
Glmdirs/ProjectAD/C/cache.th30.abs.sig.cluster.summary --ocn
Glmdirs/ProjectAD/C/cache.th30.abs.sig.ocn.mgh --annot aparc --cwpvalthresh
0.05 --o Glmdirs/ProjectAD/C/cache.th30.abs.sig.masked.mgh --no-fixmni
--csd
//Users/MacPro/Documents/freesurfer_b6/average/mult-comp-cor/fsaverage/lh/cortex/fwhm21/abs/th30/mc-z.csd
--csdpdf Glmdirs/ProjectAD/C/cache.th30.abs.pdf.dat --vwsig
Glmdirs/ProjectAD/C/cache.th30.abs.sig.voxel.mgh --vwsigmax
Glmdirs/ProjectAD/C/cache.th30.abs.sig.voxel.max.dat --oannot
Glmdirs/ProjectAD/C/cache.th30.abs.sig.ocn.annot --bonferroni 2 --surf white
ERROR: Option --vwsigmax unknown
Best Wishes,
Elijah