On 3/24/2021 5:11 PM, Blanpain, Lou wrote:

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Hello,

I had the following 2 general questions regarding Freesurfer:

1. Is there an extensive list of anatomical labels for each atlas used? For instance, what are all the potential labels used in wmparc.mgz? I am aware of the extensive list of labels in ‘FreeSurferColorLUT.txt’, but this list does not seem to indicate which labels are included in which atlas.

The easiest thing to do is to look in the corresponding .stats file (eg, subject/stats/wmparc.stats)

2. Do we know of Freesurfer users who have already worked on categorizing labels from such atlases? For instance, I would be interested in categorizing labels belonging to the visual system network vs the auditory system network.

Not that I know of.

Thank you so much for your assistance.

Warm regards,

Lou Blanpain

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