Chacko,

Attached is the file 'AsegStatsLUT.txt'

I'm not sure about the other messages.

Nick

On Fri, 2007-01-26 at 16:55 -0800, Chacko Cherian wrote:

Hello users,

I was running longitudinal analysis for a couple of scans and recon-all exited with this error.

CTABread(/usr/local/freesurfer/ASegStatsLUT.txt): could not open file No such file or directory atlas_icv = 1.74537e+06 Loading mri/aseg.mgz Loading mri/norm.mgz Loading mri/norm.mgz Loading mri/brainmask.mgz # nbrainmaskvoxels 1836053 # brainmaskvolume 1836053.0 # nbrainsegvoxels 1347237 # brainsegvolume 1347237.0 Voxel Volume is 1 mm^3 Generating list of segmentation ids ERROR: reading /usr/local/freesurfer/ASegStatsLUT.txt Linux snuffy 2.6.17-10-generic #2 SMP Tue Dec 5 22:28:26 UTC 2006 i686 GNU/Linux

recon-all-long exited with ERRORS at Thu Jan 25 11:38:22 MST 2007

there were also a couple of lines like these where it couldn't find gc for labels.

GCAmaxLikelihoodBorderLabel(138, 152, 124): couldn't find gc for label 28 GCAmaxLikelihoodBorderLabel(203, 103, 130): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(154, 177, 130): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(154, 178, 130): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(203, 103, 131): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(207, 126, 136): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(207, 126, 137): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(207, 127, 137): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(150, 145, 150): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(150, 146, 150): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(150, 146, 151): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(159, 157, 163): couldn't find gc for label 3 GCAmaxLikelihoodBorderLabel(135, 159, 163): couldn't find gc for label 42 GCAmaxLikelihoodBorderLabel(136, 159, 163): couldn't find gc for label 42

Thsnks in advance

Chacko.

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