Thanks, this answered my question.

Deniz

On Wed, Apr 3, 2013 at 1:26 PM, Martin Reuter mreuter@nmr.mgh.harvard.eduwrote:

Hi Deniz,

if it is a mask or a label, you may want to use nearest neighbour interpolation (instead of the default tri-linear), use -rt nearest with mri_convert.

Best, Martin

On 04/03/2013 12:40 PM, Bruce Fischl wrote:

Hi Deniz

yes, mri_convert or mri_vol2vol should be able to do this. e.g. mri_convert -at <xform> <input vol> <output vol>

cheers Bruce

On Wed, 3 Apr 2013, Deniz Ozgen wrote:

I registered two images using mri_robust_register. Is possible to apply the same transformation to another image (a mask) in the same space as the initial "mov" image? (using the lta files?) I could not find the information in Freesurfer site.

Thanks

Deniz

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