External Email - Use Caution
Dear All, I ran recon-all using single MPRAGE data set, but batching exited with an error. According to recon-all.log, there is no such a file or directory (INFO:trgsubject = srcsubject). It could not read fsaverage/surf/lh.white. I was able to run a subject before without any error not sure why all the subjects I ran now over the weekend ended up with same error. The detail information please see the attachments.Thanks in advance.Jiachen
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Hi Jiachen
does the fsaverage dir exist? It should be symlinked from you $SUBJECTS_DIR to $FREESUFER_HOME/subjects/fsaverage.
cheers Bruce
On Sun, 16 Jun 2019, chen wrote:
External Email - Use Caution
Dear All, I ran recon-all using single MPRAGE data set, but batching exited with an error. According to recon- all.log, there is no such a file or directory (INFO:trgsubject = srcsubject).
It could not read fsaverage/surf/lh.white.
I was able to run a subject before without any error not sure why all the subjects I ran now over th e weekend ended up with same error. The detail information please see the attachments.
Thanks in advance.
Jiachen
freesurfer@nmr.mgh.harvard.edu