Dear FS expert
I try to smooth surface area files with the following command:
mri_surf2surf --hemi lh --s MOREA_KG002 --sval-area area --fwhm 15 --tval lh.area.15.mgh --cortex
But there is an error:
srcsubject = MOREA_KG002 srcval = (null) srctype = trgsubject = MOREA_KG002 trgval = lh.area.15.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = (null) label-trg = lh.cortex.label OKToRevFaceOrder = 1 Reading source surface reg /Applications/freesurfer/subjects/MOREA_KG002/surf/lh.sphere.reg Loading source data Reading surface file /Applications/freesurfer/subjects/MOREA_KG002/surf/lh.area nquads=9895939, nvertices=399 ERROR: MRISread: file '/Applications/freesurfer/subjects/MOREA_KG002/surf/lh.area' has many more faces than vertices! Probably trying to use a scalar data file as a surface!
How to solve the problem?
Thanks in advance Regards Jürgen
---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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The argument to --sval-area is the surface that you want to get the area from. If you want the area of the white surface, then just put "white" there. Or you can use "--sval lh.area" instead of "--sval-area white". doug
On 6/6/12 9:28 AM, Jürgen Hänggi wrote:
Dear FS expert
I try to smooth surface area files with the following command:
mri_surf2surf --hemi lh --s MOREA_KG002 --sval-area area --fwhm 15 --tval lh.area.15.mgh --cortex
But there is an error:
srcsubject = MOREA_KG002 srcval = (null) srctype = trgsubject = MOREA_KG002 trgval = lh.area.15.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 15 label-src = (null) label-trg = lh.cortex.label OKToRevFaceOrder = 1 Reading source surface reg /Applications/freesurfer/subjects/MOREA_KG002/surf/lh.sphere.reg Loading source data Reading surface file /Applications/freesurfer/subjects/MOREA_KG002/surf/lh.area nquads=9895939, nvertices=399 ERROR: MRISread: file '/Applications/freesurfer/subjects/MOREA_KG002/surf/lh.area' has many more faces than vertices! Probably trying to use a scalar data file as a surface!
How to solve the problem?
Thanks in advance Regards Jürgen
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden.
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Jürgen Hänggi