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Sorry for the typing error. How to change --annot within fspalm

Many thanks Wenjun

On Thu, May 19, 2022 at 11:26 AM Wenjun Huang wh2196@nyu.edu wrote:

Many thanks!

Best, Wenjun

On Thu, May 19, 2022 at 11:25 AM Wenjun Huang wh2196@nyu.edu wrote:

...

I'm attempting to use fspalm ( https://secure-web.cisco.com/1P6HkzX875RFyYC5DsJmukY3Fbs-Qqtjv6rlOJ_FqTCcbRz...), and I copied fspalm, mri_volcluster, and mri_surfcluster into $FREESURFER_HOME/bin. But get error: MRISread(): could not open file mri_surfcluster: could not read surface /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white---------------------------------------------------- Reading source surface /home/lipalab/Desktop/hwj/GLM/children/fsaverage/surf/lh.white And after I copy mri_volcluster, and mri_surfcluster into $FREESURFER_HOME/bin, I got this error when I run mri_glmfit-sim. I wonder if it's because of my freesurfer's version? And if it works for me if I get a newer version, will it be ok if I recon-all, mri_glm-stim, mri_glmfit-sim on 6.0v and do the fspalm on 7.2v within one project?

I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, I've attached the fspalm.log and in case it's of any use.

1. FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a

2. Platform: Ubuntu 18.04 LTS(Bionic Beaver)

3. uname -a: Linux lipalab-Precision-5820-Tower 5.4.0-100-generic #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

4. fspalm.log and perm.th40.abs.mri_glmfit-sim.log: see attached