Hi Bruce Thanks for the reply. I am not running the latest. In fact I completed FS on most of the subjects before the new version. Can I apply this new feature to earlier runs ? If I can't I will just rerun few cases just for showcasing. I will update to new version though. Thanks, Truly, Indika Walimuni, PhD Post-doctoral Research Associate University of Texas Health Science Center Houston, TX. ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Friday, September 03, 2010 4:15 PM To: Walimuni, Indika S Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Visualizing Brodmann's areas

Hi Indika,

what version are you using? The newest FS generates a set of Brodmann area probablistic maps by default.

cheers Bruce On Fri, 3 Sep 2010, Walimuni, Indika S wrote:

Hi FreeSurfer list Please apologize me if this has been already answered. Is their a way that I can visualize Brodmann's areas on a FreeSurfer subject ? If this is not possible, then is there a standard Brodmann template/atlas so that I can register my volume to it and then visualize ? Thanks, Truly, Indika Walimuni, PhD Post-doctoral Research Associate University of Texas Health Science Center Houston, TX. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

Hi Bruce, Here is the build-stamp of the version that I am running, "freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0" . I checked recon-all's options and didn't find an option "-balabels" too. Thanks, Truly, Indika Walimuni, PhD Post-doctoral Research Associate University of Texas Health Science Center Houston, TX. ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Friday, September 03, 2010 6:36 PM To: Walimuni, Indika S Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] Visualizing Brodmann's areas

what version? It needs to have the same fsaverage. If -balabels in recon-all works, then you should be set. Otherwise you'll probably need to rerun

On Fri, 3 Sep 2010, Walimuni, Indika S wrote:

Hi Bruce Thanks for the reply. I am not running the latest. In fact I completed FS on most of the subjects before the new version. Can I apply this new feature to earlier runs ? If I can't I will just rerun few cases just for showcasing. I will update to new version though. Thanks, Truly, Indika Walimuni, PhD Post-doctoral Research Associate University of Texas Health Science Center Houston, TX. ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Friday, September 03, 2010 4:15 PM To: Walimuni, Indika S Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Visualizing Brodmann's areas

Hi Indika,

what version are you using? The newest FS generates a set of Brodmann area probablistic maps by default.

cheers Bruce On Fri, 3 Sep 2010, Walimuni, Indika S wrote:

...

Hi FreeSurfer list Please apologize me if this has been already answered. Is their a way that I can visualize Brodmann's areas on a FreeSurfer subject ? If this is not possible, then is there a standard Brodmann template/atlas so that I can register my volume to it and then visualize ? Thanks, Truly, Indika Walimuni, PhD Post-doctoral Research Associate University of Texas Health Science Center Houston, TX. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.